RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 PTPN23Q9H3S7 1636 aa23.47■■□□□ 1.35
PTPN12-201ENST00000248594 PDE3BQ13370 1112 aa23.46■■□□□ 1.35
PTPN12-201ENST00000248594 RGL3Q3MIN7 710 aa23.46■■□□□ 1.35
PTPN12-201ENST00000248594 UPF2Q9HAU5 1272 aaKnown RBP23.46■■□□□ 1.35
PTPN12-201ENST00000248594 GRIN2BQ13224 1484 aa23.45■■□□□ 1.34
PTPN12-201ENST00000248594 ERBB4Q15303 1308 aa23.45■■□□□ 1.34
PTPN12-201ENST00000248594 KIAA1211Q6ZU35 1233 aa23.44■■□□□ 1.34
PTPN12-201ENST00000248594 NLRP13Q86W25 1043 aa23.44■■□□□ 1.34
PTPN12-201ENST00000248594 TRAK2O60296 914 aa23.44■■□□□ 1.34
PTPN12-201ENST00000248594 PRDM10Q9NQV6 1147 aa23.44■■□□□ 1.34
PTPN12-201ENST00000248594 KIF15Q9NS87 1388 aa23.42■■□□□ 1.34
PTPN12-201ENST00000248594 KDM2BQ8NHM5 1336 aa23.41■■□□□ 1.34
PTPN12-201ENST00000248594 RALBP1Q15311 655 aa23.41■■□□□ 1.34
PTPN12-201ENST00000248594 MCM4P33991 863 aa23.4■■□□□ 1.34
PTPN12-201ENST00000248594 ZHX1Q9UKY1 873 aaPredicted RBP23.4■■□□□ 1.34
PTPN12-201ENST00000248594 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.39■■□□□ 1.34
PTPN12-201ENST00000248594 GRPEL1Q9HAV7 217 aa23.38■■□□□ 1.33
PTPN12-201ENST00000248594 FOXD4L1Q9NU39 408 aa23.37■■□□□ 1.33
PTPN12-201ENST00000248594 TBC1D2Q9BYX2 928 aa23.36■■□□□ 1.33
PTPN12-201ENST00000248594 BRD4O60885 1362 aaPredicted RBP23.36■■□□□ 1.33
PTPN12-201ENST00000248594 IGHDP01880 384 aa23.36■■□□□ 1.33
PTPN12-201ENST00000248594 CCDC146Q8IYE0 955 aa23.36■■□□□ 1.33
PTPN12-201ENST00000248594 CASKIN1Q8WXD9 1431 aa23.36■■□□□ 1.33
PTPN12-201ENST00000248594 ADAMTS12P58397 1594 aa23.36■■□□□ 1.33
PTPN12-201ENST00000248594 BCAR3O75815 825 aa23.35■■□□□ 1.33
PTPN12-201ENST00000248594 MRE11P49959 708 aa23.35■■□□□ 1.33
PTPN12-201ENST00000248594 PKD2Q13563 968 aa23.35■■□□□ 1.33
PTPN12-201ENST00000248594 AMER1Q5JTC6 1135 aaPredicted RBP23.34■■□□□ 1.33
PTPN12-201ENST00000248594 PDCL3Q9H2J4 239 aa23.34■■□□□ 1.33
PTPN12-201ENST00000248594 MYOM3Q5VTT5 1437 aa23.34■■□□□ 1.33
PTPN12-201ENST00000248594 SNAPC4Q5SXM2 1469 aa23.33■■□□□ 1.33
PTPN12-201ENST00000248594 WDR43Q15061 677 aaKnown RBP eCLIP23.33■■□□□ 1.32
PTPN12-201ENST00000248594 ADAMTS8Q9UP79 889 aa23.33■■□□□ 1.32
PTPN12-201ENST00000248594 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.32■■□□□ 1.321e-6■□□□□ 10.5
PTPN12-201ENST00000248594 COG6Q9Y2V7 657 aa23.32■■□□□ 1.32
PTPN12-201ENST00000248594 R3HCC1Q9Y3T6 440 aaKnown RBP23.32■■□□□ 1.32
PTPN12-201ENST00000248594 PDE4CQ08493 712 aa23.32■■□□□ 1.32
PTPN12-201ENST00000248594 MFAP1P55081 439 aaKnown RBP23.31■■□□□ 1.32
PTPN12-201ENST00000248594 LRPPRCP42704 1394 aaKnown RBP23.31■■□□□ 1.32
PTPN12-201ENST00000248594 SPATA31E1Q6ZUB1 1445 aa23.31■■□□□ 1.32
PTPN12-201ENST00000248594 USP19O94966 1318 aa23.31■■□□□ 1.32
PTPN12-201ENST00000248594 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.29■■□□□ 1.322e-10■■■■■ 34.7
PTPN12-201ENST00000248594 KDM6BO15054 1643 aa23.29■■□□□ 1.32
PTPN12-201ENST00000248594 MAGI1Q96QZ7 1491 aaPredicted RBP23.28■■□□□ 1.32
PTPN12-201ENST00000248594 AEBP2Q6ZN18 517 aaPredicted RBP23.28■■□□□ 1.32
PTPN12-201ENST00000248594 PANK1Q8TE04 598 aa23.28■■□□□ 1.32
PTPN12-201ENST00000248594 DENND4BO75064 1496 aaPredicted RBP23.27■■□□□ 1.32
PTPN12-201ENST00000248594 ANKRD30BQ9BXX2 1392 aa23.27■■□□□ 1.32
PTPN12-201ENST00000248594 TPM2P07951 284 aa23.26■■□□□ 1.31
PTPN12-201ENST00000248594 FYCO1Q9BQS8 1478 aa23.26■■□□□ 1.31
PTPN12-201ENST00000248594 FSD2A1L4K1 749 aa23.26■■□□□ 1.31
PTPN12-201ENST00000248594 MSNP26038 577 aaKnown RBP23.26■■□□□ 1.31
PTPN12-201ENST00000248594 AAMPQ13685 434 aa23.25■■□□□ 1.31
PTPN12-201ENST00000248594 SENP3Q9H4L4 574 aaPredicted RBP23.25■■□□□ 1.31
PTPN12-201ENST00000248594 CDK13Q14004 1512 aaKnown RBP23.25■■□□□ 1.31
PTPN12-201ENST00000248594 CTTNBP2Q8WZ74 1663 aa23.24■■□□□ 1.31
PTPN12-201ENST00000248594 NCLP19338 710 aaKnown RBP23.24■■□□□ 1.31
PTPN12-201ENST00000248594 NEUROD2Q15784 382 aa23.24■■□□□ 1.31
PTPN12-201ENST00000248594 GOLGA2Q08379 1002 aa23.24■■□□□ 1.31
PTPN12-201ENST00000248594 ANP32BQ92688 251 aaKnown RBP23.24■■□□□ 1.31
PTPN12-201ENST00000248594 ANTXR1Q9H6X2 564 aa23.23■■□□□ 1.31
PTPN12-201ENST00000248594 CFDP1Q9UEE9 299 aaPredicted RBP23.23■■□□□ 1.31
PTPN12-201ENST00000248594 CLUAP1Q96AJ1 413 aa23.23■■□□□ 1.31
PTPN12-201ENST00000248594 GAS2L3Q86XJ1 694 aa23.21■■□□□ 1.31
PTPN12-201ENST00000248594 BCL2L13Q9BXK5 485 aa23.21■■□□□ 1.31
PTPN12-201ENST00000248594 SYNJ2O15056 1496 aa23.2■■□□□ 1.3
PTPN12-201ENST00000248594 PANK3Q9H999 370 aa23.2■■□□□ 1.3
PTPN12-201ENST00000248594 CHMP5Q9NZZ3 219 aa23.2■■□□□ 1.3
PTPN12-201ENST00000248594 DUSP27Q5VZP5 1158 aa23.19■■□□□ 1.3
PTPN12-201ENST00000248594 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
PTPN12-201ENST00000248594 CALD1Q05682 793 aaKnown RBP23.17■■□□□ 1.3
PTPN12-201ENST00000248594 ROCK2O75116 1388 aaKnown RBP23.17■■□□□ 1.3
PTPN12-201ENST00000248594 RPRD2Q5VT52 1461 aaKnown RBP23.17■■□□□ 1.3
PTPN12-201ENST00000248594 PRDM4Q9UKN5 801 aa23.16■■□□□ 1.3
PTPN12-201ENST00000248594 FGD1P98174 961 aa23.16■■□□□ 1.3
PTPN12-201ENST00000248594 CHMP7Q8WUX9 453 aaPredicted RBP23.16■■□□□ 1.3
PTPN12-201ENST00000248594 HSCBQ8IWL3 235 aa23.15■■□□□ 1.3
PTPN12-201ENST00000248594 XPCQ01831 940 aaPredicted RBP23.14■■□□□ 1.3
PTPN12-201ENST00000248594 MAGI3Q5TCQ9 1506 aa23.14■■□□□ 1.29
PTPN12-201ENST00000248594 MIA2Q96PC5 1412 aa23.14■■□□□ 1.29
PTPN12-201ENST00000248594 SPINK5Q9NQ38 1064 aaPredicted RBP23.13■■□□□ 1.29
PTPN12-201ENST00000248594 APAF1O14727 1248 aa23.13■■□□□ 1.29
PTPN12-201ENST00000248594 BCL11BQ9C0K0 894 aaPredicted RBP23.12■■□□□ 1.29
PTPN12-201ENST00000248594 CFAP43Q8NDM7 1665 aa23.11■■□□□ 1.29
PTPN12-201ENST00000248594 TEX14Q8IWB6 1497 aa23.11■■□□□ 1.29
PTPN12-201ENST00000248594 RIPK4P57078 832 aa23.11■■□□□ 1.29
PTPN12-201ENST00000248594 BCORL1Q5H9F3 1711 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 UQCRHLA0A096LP55 91 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 UQCRHP07919 91 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 HSP90AB1P08238 724 aaKnown RBP23.1■■□□□ 1.29
PTPN12-201ENST00000248594 TBC1D32Q96NH3 1257 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 NASPP49321 788 aaPredicted RBP23.1■■□□□ 1.29
PTPN12-201ENST00000248594 PLEKHH1Q9ULM0 1364 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 NBPF1Q3BBV0 1214 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 C22orf23Q9BZE7 217 aa23.1■■□□□ 1.29
PTPN12-201ENST00000248594 DDX11L8A8MPP1 907 aa23.09■■□□□ 1.29
PTPN12-201ENST00000248594 PDZRN3Q9UPQ7 1066 aa23.09■■□□□ 1.29
PTPN12-201ENST00000248594 MAPK8IP3Q9UPT6 1336 aa23.09■■□□□ 1.29
PTPN12-201ENST00000248594 MPNDQ8N594 471 aa23.09■■□□□ 1.29
PTPN12-201ENST00000248594 TNNQ9UQP3 1299 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms