RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	YMR130W	Q04223	302 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	BCH1	Q05029	724 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	DCS1	Q06151	350 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	YLR455W	Q06188	304 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	ARO10	Q06408	635 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	TEN1	Q07921	160 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	YLR031W	Q07978	186 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	YDL109C	Q12103	647 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	MRH1	Q12117	320 aa	Predicted RBP	4.05	□□□□□ -1.76
PRE9	YGR135W	ACF2	Q12168	779 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	PST2	Q12335	198 aa	Known RBP	4.05	□□□□□ -1.76
PRE9	YGR135W	ATG31	Q12421	196 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	AHA1	Q12449	350 aa	Known RBP	4.05	□□□□□ -1.76
PRE9	YGR135W	ZPS1	Q12512	249 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.05	□□□□□ -1.76
PRE9	YGR135W	MHF1	Q3E835	90 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	RIB3	Q99258	208 aa		4.05	□□□□□ -1.76
PRE9	YGR135W	RAD7	P06779	565 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	ATP1	P07251	545 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	RPL31B	P0C2H9	113 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	COS2	P0CX12	379 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	COS3	P0CX13	379 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	CAP2	P13517	287 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	SPO7	P18410	259 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	SAR1	P20606	190 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	RHB1	P25378	209 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	DAL80	P26343	269 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	CIN8	P27895	1000 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	TAF14	P35189	244 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	GMH1	P36125	273 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	TVP38	P36164	337 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	MRPL17	P36528	281 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	PIM1	P36775	1133 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	NAT2	P37293	288 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	RPL32	P38061	130 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	RIB1	P38066	345 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	ARA1	P38115	344 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	IMD2	P38697	523 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	MNN9	P39107	395 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	MTW1	P39731	289 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	MIT1	P40002	666 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	HMF1	P40037	129 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	DDI1	P40087	428 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	YKE4	P40544	346 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	IRC18	P47056	224 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	MRH4	P53166	561 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	GTR2	P53290	341 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	COQ6	P53318	479 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	GND2	P53319	492 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	DBP6	P53734	629 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	ZRG17	P53735	605 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	ALG11	P53954	548 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	SLG1	P54867	378 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	SMA1	Q02651	245 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	HER2	Q03557	464 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	NEJ1	Q06148	342 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	HBT1	Q07653	1046 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	COS7	Q07788	383 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	GSH2	Q08220	491 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	SLF1	Q12034	447 aa	Known RBP	4.04	□□□□□ -1.76
PRE9	YGR135W	RBD2	Q12270	262 aa		4.04	□□□□□ -1.76
PRE9	YGR135W	TIM9	O74700	87 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	ARG81	P05085	880 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	CHS1	P08004	1131 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	HPR1	P17629	752 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	ATG22	P25568	528 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	GAC1	P28006	793 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YIM1	P28625	365 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	ARO7	P32178	256 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	AFG1	P32317	509 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	ZRT3	P34240	503 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	DBP8	P38719	431 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YHR045W	P38775	560 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	PCL5	P38794	229 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	LSM12	P38828	187 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	ATM1	P40416	690 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	SER2	P42941	309 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	MNN5	P46982	586 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YGR168C	P53293	376 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	VAC7	P53950	1165 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	ERV25	P54837	211 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	DID2	P69771	204 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	NUP49	Q02199	472 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	MZM1	Q03429	123 aa	Predicted RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	MAK3	Q03503	176 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	RPN9	Q04062	393 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	EMI2	Q04409	500 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	GRS2	Q06817	618 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YNG1	Q08465	219 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YLR049C	Q12110	428 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	UBX3	Q12229	455 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YOR214C	Q12282	236 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	JLP1	Q12358	412 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	WTM1	Q12363	437 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	EFG1	Q3E705	233 aa	Known RBP	4.03	□□□□□ -1.76
PRE9	YGR135W	Q0010	Q9ZZX9	128 aa		4.03	□□□□□ -1.76
PRE9	YGR135W	YMR084W	A2P2R3	262 aa		4.02	□□□□□ -1.77
PRE9	YGR135W	SPS4	P09937	338 aa		4.02	□□□□□ -1.77
PRE9	YGR135W	CPR3	P25719	182 aa		4.02	□□□□□ -1.77
PRE9	YGR135W	PTM1	P32857	523 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 218.8 ms