RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W IFM1P25038 676 aa1.07□□□□□ -2.24
CDC39YCR093W RPL5P26321 297 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W RTC2P38279 296 aa1.07□□□□□ -2.24
CDC39YCR093W ALP1P38971 573 aa1.07□□□□□ -2.24
CDC39YCR093W IMP4P53941 290 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W OCA2P53949 197 aa1.07□□□□□ -2.24
CDC39YCR093W DIG1Q03063 452 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W VTI1Q04338 217 aa1.07□□□□□ -2.24
CDC39YCR093W APC4Q04601 652 aa1.07□□□□□ -2.24
CDC39YCR093W HCR1Q05775 265 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W BNA5Q05979 453 aa1.07□□□□□ -2.24
CDC39YCR093W YPL245WQ12179 454 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W WTM1Q12363 437 aaKnown RBP1.07□□□□□ -2.24
CDC39YCR093W SNU23Q12368 194 aaPredicted RBP1.07□□□□□ -2.24
CDC39YCR093W CDC37P06101 506 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W HEM4P06174 275 aa1.06□□□□□ -2.24
CDC39YCR093W PET123P17558 318 aa1.06□□□□□ -2.24
CDC39YCR093W YUR1P26725 428 aa1.06□□□□□ -2.24
CDC39YCR093W MRPS9P38120 278 aa1.06□□□□□ -2.24
CDC39YCR093W GND1P38720 489 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W YHK8P38776 514 aa1.06□□□□□ -2.24
CDC39YCR093W FAD1P38913 306 aa1.06□□□□□ -2.24
CDC39YCR093W GGC1P38988 300 aa1.06□□□□□ -2.24
CDC39YCR093W HAT2P39984 401 aa1.06□□□□□ -2.24
CDC39YCR093W RTT105P40063 208 aa1.06□□□□□ -2.24
CDC39YCR093W PCL7P40186 285 aa1.06□□□□□ -2.24
CDC39YCR093W YIL152WP40455 235 aa1.06□□□□□ -2.24
CDC39YCR093W LCB3P47013 409 aa1.06□□□□□ -2.24
CDC39YCR093W TPS1Q00764 495 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W RAD3P06839 778 aa1.06□□□□□ -2.24
CDC39YCR093W RPC40P07703 335 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W YER190C-BP0CX94 160 aa1.06□□□□□ -2.24
CDC39YCR093W YEL077W-AP0CX95 160 aa1.06□□□□□ -2.24
CDC39YCR093W YGR296C-BP0CX96 160 aa1.06□□□□□ -2.24
CDC39YCR093W YPL283W-BP0CX97 160 aa1.06□□□□□ -2.24
CDC39YCR093W YPR204C-AP0CX98 160 aa1.06□□□□□ -2.24
CDC39YCR093W SHC1P39000 512 aa1.06□□□□□ -2.24
CDC39YCR093W YFR018CP43599 363 aa1.06□□□□□ -2.24
CDC39YCR093W AVT4P50944 713 aa1.06□□□□□ -2.24
CDC39YCR093W TAF6P53040 516 aa1.06□□□□□ -2.24
CDC39YCR093W MSO1P53604 210 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W RPM2Q02773 1202 aa1.06□□□□□ -2.24
CDC39YCR093W MSC1Q03104 513 aa1.06□□□□□ -2.24
CDC39YCR093W BER1Q06688 274 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W YDL109CQ12103 647 aa1.06□□□□□ -2.24
CDC39YCR093W KAR3P17119 729 aa1.06□□□□□ -2.24
CDC39YCR093W CCT2P39076 527 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W PAN6P40459 309 aa1.06□□□□□ -2.24
CDC39YCR093W HXT9P40885 567 aa1.06□□□□□ -2.24
CDC39YCR093W RPE1P46969 238 aa1.06□□□□□ -2.24
CDC39YCR093W TCB2P48231 1178 aa1.06□□□□□ -2.24
CDC39YCR093W ASA1Q06822 443 aa1.06□□□□□ -2.24
CDC39YCR093W SRO7Q12038 1033 aa1.06□□□□□ -2.24
CDC39YCR093W PSK1P31374 1356 aa1.06□□□□□ -2.24
CDC39YCR093W VPS63O13549 108 aa1.06□□□□□ -2.24
CDC39YCR093W RPS19AP07280 144 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W RPS19BP07281 144 aaPredicted RBP1.06□□□□□ -2.24
CDC39YCR093W PUT4P15380 627 aa1.06□□□□□ -2.24
CDC39YCR093W HEL1P36113 551 aa1.06□□□□□ -2.24
CDC39YCR093W LAS1P36146 502 aaPredicted RBP1.06□□□□□ -2.24
CDC39YCR093W SHE3P38272 425 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W WSC4P38739 605 aa1.06□□□□□ -2.24
CDC39YCR093W MNN9P39107 395 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W YPS6P40583 537 aa1.06□□□□□ -2.24
CDC39YCR093W CGR1P53188 120 aa1.06□□□□□ -2.24
CDC39YCR093W SLI1P53304 468 aa1.06□□□□□ -2.24
CDC39YCR093W YMR209CQ03648 457 aa1.06□□□□□ -2.24
CDC39YCR093W CSI1Q04368 295 aa1.06□□□□□ -2.24
CDC39YCR093W PGC1Q08959 321 aa1.06□□□□□ -2.24
CDC39YCR093W Q0010Q9ZZX9 128 aa1.06□□□□□ -2.24
CDC39YCR093W CHO1P08456 276 aa1.06□□□□□ -2.24
CDC39YCR093W YSR3P23501 404 aa1.06□□□□□ -2.24
CDC39YCR093W VPS3P23643 1011 aa1.06□□□□□ -2.24
CDC39YCR093W HXT1P32465 570 aa1.06□□□□□ -2.24
CDC39YCR093W CAB3P36076 571 aa1.06□□□□□ -2.24
CDC39YCR093W SSH1P38353 490 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W CCT6P39079 546 aa1.06□□□□□ -2.24
CDC39YCR093W SLX9P53251 210 aaPredicted RBP1.06□□□□□ -2.24
CDC39YCR093W BUD32P53323 261 aa1.06□□□□□ -2.24
CDC39YCR093W SLD7Q08457 257 aa1.06□□□□□ -2.24
CDC39YCR093W ALE1Q08548 619 aa1.06□□□□□ -2.24
CDC39YCR093W RPN8Q08723 338 aaKnown RBP1.06□□□□□ -2.24
CDC39YCR093W YBR241CP38142 488 aa1.05□□□□□ -2.24
CDC39YCR093W MTC4P38335 694 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W STN1P38960 494 aa1.05□□□□□ -2.24
CDC39YCR093W YPI1P43587 155 aa1.05□□□□□ -2.24
CDC39YCR093W NBP1P52919 319 aaPredicted RBP1.05□□□□□ -2.24
CDC39YCR093W TIM21P53220 239 aa1.05□□□□□ -2.24
CDC39YCR093W MSC3Q05812 728 aa1.05□□□□□ -2.24
CDC39YCR093W NCE102Q12207 173 aaRIP-Chip data1.05□□□□□ -2.24not detected
CDC39YCR093W YDR262WQ12331 272 aa1.05□□□□□ -2.24
CDC39YCR093W MHP1P43638 1398 aa1.05□□□□□ -2.24
CDC39YCR093W YPR096CO13587 100 aa1.05□□□□□ -2.24
CDC39YCR093W SPS19P32573 292 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W HIS2P38635 335 aa1.05□□□□□ -2.24
CDC39YCR093W KRE29P40026 464 aa1.05□□□□□ -2.24
CDC39YCR093W YFL040WP43562 540 aa1.05□□□□□ -2.24
CDC39YCR093W AIM23P47015 356 aa1.05□□□□□ -2.24
CDC39YCR093W NRM1P53718 249 aa1.05□□□□□ -2.24
CDC39YCR093W ELP3Q02908 557 aaKnown RBP1.05□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 56.4 ms