RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 VIL1P09327 827 aaKnown RBP5.29□□□□□ -1.56
CD44-219ENST00000525685 R3HDM1Q15032 1099 aaKnown RBP5.29□□□□□ -1.56
CD44-219ENST00000525685 KANK2Q63ZY3 851 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 IQSEC1Q6DN90 963 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 TCTN3Q6NUS6 607 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 ZNF585AQ6P3V2 769 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 LRSAM1Q6UWE0 723 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 HDGFL2Q7Z4V5 671 aaPredicted RBP5.29□□□□□ -1.56
CD44-219ENST00000525685 STRA8Q7Z7C7 330 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 SMC1BQ8NDV3 1235 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 WDR66Q8TBY9 1149 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 Q8TCH9 128 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 ASB15Q8WXK1 588 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 DLG3Q92796 817 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 NEIL1Q96FI4 390 aaPredicted RBP5.29□□□□□ -1.56
CD44-219ENST00000525685 LRRC37BQ96QE4 947 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 ORAI3Q9BRQ5 295 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 BTBD2Q9BX70 525 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 PCDH12Q9NPG4 1184 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 UCKL1Q9NWZ5 548 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 FBXO10Q9UK96 956 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 BIVM-ERCC5R4GMW8 1640 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 SYNJ1O43426 1573 aa5.29□□□□□ -1.56
CD44-219ENST00000525685 IFT140Q96RY7 1462 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 WDR97A6NE52 1622 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 TARBP1Q13395 1621 aaKnown RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 PRAMEF22A3QJZ6 481 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 FAM83GA6ND36 823 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 RASSF10A6NK89 507 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 NEMP1O14524 444 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 FOXS1O43638 330 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 ZBTB48P10074 688 aaPredicted RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 ADCY8P40145 1251 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 ADCYAP1R1P41586 468 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 ECE1P42892 770 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 LSSP48449 732 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 SELENOPP49908 381 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 TMPRSS15P98073 1019 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 DSG1Q02413 1049 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 EIF4HQ15056 248 aaKnown RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 RNF151Q2KHN1 245 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 ZNF568Q3ZCX4 644 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 CC2D1AQ6P1N0 951 aaPredicted RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 EFHBQ8N7U6 833 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 SH3RF3Q8TEJ3 882 aaPredicted RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 E2F7Q96AV8 911 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 CDK5RAP1Q96SZ6 601 aaKnown RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 ELF4Q99607 663 aaPredicted RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 TMPRSS5Q9H3S3 457 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 DEF6Q9H4E7 631 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 SPTLC3Q9NUV7 552 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 H2AFY2Q9P0M6 372 aaPredicted RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 ATP8A1Q9Y2Q0 1164 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 NOP58Q9Y2X3 529 aaKnown RBP5.28□□□□□ -1.56
CD44-219ENST00000525685 SPO11Q9Y5K1 396 aa5.28□□□□□ -1.56
CD44-219ENST00000525685 TOP2BQ02880 1626 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 EIF4G3O43432 1585 aaKnown RBP5.27□□□□□ -1.57
CD44-219ENST00000525685 APOL3O95236 402 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 SDHAP31040 664 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 LSP1P33241 339 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 RRADP55042 308 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 RAC3P60763 192 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 CD83Q01151 205 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 WRNQ14191 1432 aaPredicted RBP eCLIP5.27□□□□□ -1.57
CD44-219ENST00000525685 STAT4Q14765 748 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 DDB1Q16531 1140 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 ZMAT1Q5H9K5 638 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 TMEM200BQ69YZ2 307 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 TIGD7Q6NT04 549 aaPredicted RBP5.27□□□□□ -1.57
CD44-219ENST00000525685 LARP4Q71RC2 724 aaKnown RBP eCLIP5.27□□□□□ -1.57
CD44-219ENST00000525685 SPRED1Q7Z699 444 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 TAX1BP1Q86VP1 789 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 DDX42Q86XP3 938 aaKnown RBP eCLIP5.27□□□□□ -1.57
CD44-219ENST00000525685 NME9Q86XW9 330 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 ZZZ3Q8IYH5 903 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 OR10A5Q9H207 317 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 KCNG1Q9UIX4 513 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 APOBEC2Q9Y235 224 aaKnown RBP5.27□□□□□ -1.57
CD44-219ENST00000525685 NOC2LQ9Y3T9 749 aaKnown RBP5.27□□□□□ -1.57
CD44-219ENST00000525685 TCAF1Q9Y4C2 921 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 ASB1Q9Y576 335 aa5.27□□□□□ -1.57
CD44-219ENST00000525685 ZNF608Q9ULD9 1512 aaPredicted RBP5.27□□□□□ -1.57
CD44-219ENST00000525685 PPM1GO15355 546 aaPredicted RBP5.26□□□□□ -1.57
CD44-219ENST00000525685 ULK1O75385 1050 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 HMGCRP04035 888 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 CDK11BP21127 795 aaKnown RBP5.26□□□□□ -1.57
CD44-219ENST00000525685 CD40P25942 277 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 PTX3P26022 381 aaPredicted RBP5.26□□□□□ -1.57
CD44-219ENST00000525685 ID4P47928 161 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 KCNQ1P51787 676 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 ZXDAP98168 799 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 ADCY1Q08828 1119 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 NFYCQ13952 458 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 FAM50AQ14320 339 aaKnown RBP5.26□□□□□ -1.57
CD44-219ENST00000525685 NOLC1Q14978 699 aaKnown RBP eCLIP5.26□□□□□ -1.57
CD44-219ENST00000525685 TBR1Q16650 682 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 CATSPEREQ5SY80 951 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 RNF219Q5W0B1 726 aaPredicted RBP5.26□□□□□ -1.57
CD44-219ENST00000525685 TRIM68Q6AZZ1 485 aa5.26□□□□□ -1.57
CD44-219ENST00000525685 PALM2Q8IXS6 379 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms