RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 AEBP2Q6ZN18 517 aaPredicted RBP22.77■■□□□ 1.24
CD44-219ENST00000525685 CHIC1Q5VXU3 224 aa21.94■■□□□ 1.1
CD44-219ENST00000525685 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
CD44-219ENST00000525685 PHF23Q9BUL5 403 aaPredicted RBP19.28■□□□□ 0.68
CD44-219ENST00000525685 FOXD1Q16676 465 aa18■□□□□ 0.47
CD44-219ENST00000525685 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
CD44-219ENST00000525685 PPP6R1Q9UPN7 881 aa17.1■□□□□ 0.33
CD44-219ENST00000525685 ADRA2BP18089 450 aa17.05■□□□□ 0.32
CD44-219ENST00000525685 PIAS4Q8N2W9 510 aaPredicted RBP16.88■□□□□ 0.29
CD44-219ENST00000525685 MSH5O43196 834 aa16.7■□□□□ 0.26
CD44-219ENST00000525685 POTEDQ86YR6 584 aa15.73■□□□□ 0.11
CD44-219ENST00000525685 SCAF1Q9H7N4 1312 aaKnown RBP15.58■□□□□ 0.08
CD44-219ENST00000525685 MAPK8IP2Q13387 824 aaPredicted RBP15.56■□□□□ 0.08
CD44-219ENST00000525685 PPP4R3CPQ6ZMV5 832 aa15.54■□□□□ 0.08
CD44-219ENST00000525685 DMRT2Q9Y5R5 561 aa15.41■□□□□ 0.06
CD44-219ENST00000525685 CNKSR2Q8WXI2 1034 aa15.17■□□□□ 0.02
CD44-219ENST00000525685 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
CD44-219ENST00000525685 HOXD11P31277 338 aaPredicted RBP14.98□□□□□ -0.01
CD44-219ENST00000525685 RNF216Q9NWF9 866 aaPredicted RBP14.95□□□□□ -0.02
CD44-219ENST00000525685 KCNA4P22459 653 aa14.85□□□□□ -0.03
CD44-219ENST00000525685 NPM3O75607 178 aaKnown RBP14.84□□□□□ -0.03
CD44-219ENST00000525685 DCAF8L1A6NGE4 600 aa14.71□□□□□ -0.05
CD44-219ENST00000525685 DNAJC5BQ9UF47 199 aa14.48□□□□□ -0.09
CD44-219ENST00000525685 RNF39Q9H2S5 420 aa14.3□□□□□ -0.12
CD44-219ENST00000525685 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.24□□□□□ -0.13
CD44-219ENST00000525685 CACNB1Q02641 598 aaPredicted RBP14.11□□□□□ -0.15
CD44-219ENST00000525685 SLC4A2P04920 1241 aa14.1□□□□□ -0.15
CD44-219ENST00000525685 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
CD44-219ENST00000525685 SLC4A1APQ9BWU0 796 aaKnown RBP14.08□□□□□ -0.16
CD44-219ENST00000525685 U3KPZ7 1027 aaPredicted RBP14.01□□□□□ -0.17
CD44-219ENST00000525685 FOXD4L1Q9NU39 408 aa13.75□□□□□ -0.21
CD44-219ENST00000525685 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
CD44-219ENST00000525685 MYCNP04198 464 aaPredicted RBP13.7□□□□□ -0.22
CD44-219ENST00000525685 HNRNPUL2Q1KMD3 747 aaKnown RBP13.7□□□□□ -0.22
CD44-219ENST00000525685 SPINK5Q9NQ38 1064 aaPredicted RBP13.7□□□□□ -0.22
CD44-219ENST00000525685 ZBTB22O15209 634 aa13.68□□□□□ -0.22
CD44-219ENST00000525685 SAMD1Q6SPF0 538 aaPredicted RBP13.64□□□□□ -0.23
CD44-219ENST00000525685 CAPN15O75808 1086 aa13.63□□□□□ -0.23
CD44-219ENST00000525685 APLP2Q06481 763 aa13.62□□□□□ -0.23
CD44-219ENST00000525685 TRHP20396 242 aaPredicted RBP13.5□□□□□ -0.25
CD44-219ENST00000525685 DSG3P32926 999 aa13.5□□□□□ -0.25
CD44-219ENST00000525685 ZNF219Q9P2Y4 722 aaPredicted RBP13.49□□□□□ -0.25
CD44-219ENST00000525685 ATF5Q9Y2D1 282 aaPredicted RBP13.37□□□□□ -0.27
CD44-219ENST00000525685 ABCB7O75027 752 aa13.35□□□□□ -0.27
CD44-219ENST00000525685 CSRNP3Q8WYN3 585 aa13.35□□□□□ -0.27
CD44-219ENST00000525685 EHMT2Q96KQ7 1210 aa13.33□□□□□ -0.28
CD44-219ENST00000525685 ATXN8OSP0DMR3 200 aa13.3□□□□□ -0.28
CD44-219ENST00000525685 POLA2Q14181 598 aa13.22□□□□□ -0.29
CD44-219ENST00000525685 ZBTB12Q9Y330 459 aaPredicted RBP12.98□□□□□ -0.33
CD44-219ENST00000525685 RBM42Q9BTD8 480 aaKnown RBP12.85□□□□□ -0.35
CD44-219ENST00000525685 FBLN2P98095 1184 aa12.8□□□□□ -0.36
CD44-219ENST00000525685 MKRN4PQ13434 485 aaPredicted RBP12.79□□□□□ -0.36
CD44-219ENST00000525685 OSCARQ8IYS5 282 aa12.79□□□□□ -0.36
CD44-219ENST00000525685 AKT1S1Q96B36 256 aa12.64□□□□□ -0.39
CD44-219ENST00000525685 SPDYE2BA6NHP3 402 aa12.62□□□□□ -0.39
CD44-219ENST00000525685 SPDYE6P0CI01 402 aa12.62□□□□□ -0.39
CD44-219ENST00000525685 SPDYE2Q495Y8 402 aa12.62□□□□□ -0.39
CD44-219ENST00000525685 REM2Q8IYK8 340 aaPredicted RBP12.53□□□□□ -0.4
CD44-219ENST00000525685 ZNF692Q9BU19 519 aaPredicted RBP12.51□□□□□ -0.41
CD44-219ENST00000525685 SSUH2Q9Y2M2 353 aa12.5□□□□□ -0.41
CD44-219ENST00000525685 CHRDL2Q6WN34 429 aa12.44□□□□□ -0.42
CD44-219ENST00000525685 PITPNM1O00562 1244 aa12.39□□□□□ -0.43
CD44-219ENST00000525685 POTEHQ6S545 545 aa12.38□□□□□ -0.43
CD44-219ENST00000525685 PABPN1Q86U42 306 aaKnown RBP eCLIP12.34□□□□□ -0.43
CD44-219ENST00000525685 SPDYE4A6NLX3 237 aa12.33□□□□□ -0.44
CD44-219ENST00000525685 SPDYE1Q8NFV5 336 aaPredicted RBP12.31□□□□□ -0.44
CD44-219ENST00000525685 CLEC11AQ9Y240 323 aa12.25□□□□□ -0.45
CD44-219ENST00000525685 PIP4P2Q8N4L2 257 aa12.23□□□□□ -0.45
CD44-219ENST00000525685 FXR2P51116 673 aaKnown RBP eCLIP12.22□□□□□ -0.45
CD44-219ENST00000525685 PROM2Q8N271 834 aa12.13□□□□□ -0.47
CD44-219ENST00000525685 PRR29P0C7W0 189 aa12.1□□□□□ -0.47
CD44-219ENST00000525685 STAG3Q9UJ98 1225 aa12.07□□□□□ -0.48
CD44-219ENST00000525685 PRKAR2AP13861 404 aaKnown RBP12.06□□□□□ -0.48
CD44-219ENST00000525685 FKBP8Q14318 412 aa12.06□□□□□ -0.48
CD44-219ENST00000525685 CHADLQ6NUI6 762 aa12□□□□□ -0.49
CD44-219ENST00000525685 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
CD44-219ENST00000525685 HAX1O00165 279 aa11.89□□□□□ -0.51
CD44-219ENST00000525685 FARP1Q9Y4F1 1045 aaPredicted RBP11.87□□□□□ -0.51
CD44-219ENST00000525685 C19orf67A6NJJ6 358 aa11.81□□□□□ -0.52
CD44-219ENST00000525685 EVX2Q03828 476 aa11.8□□□□□ -0.52
CD44-219ENST00000525685 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.53
CD44-219ENST00000525685 SP7Q8TDD2 431 aaPredicted RBP11.77□□□□□ -0.53
CD44-219ENST00000525685 MIER1Q8N108 512 aa11.71□□□□□ -0.53
CD44-219ENST00000525685 FBXO3Q9UK99 471 aa11.71□□□□□ -0.53
CD44-219ENST00000525685 CD44P16070 742 aaKnown RBP11.69□□□□□ -0.54
CD44-219ENST00000525685 NPM1P06748 294 aaKnown RBP eCLIP11.68□□□□□ -0.54
CD44-219ENST00000525685 PLCD3Q8N3E9 789 aa11.66□□□□□ -0.54
CD44-219ENST00000525685 PLEKHG5O94827 1062 aa11.65□□□□□ -0.54
CD44-219ENST00000525685 ZRANB1Q9UGI0 708 aa11.58□□□□□ -0.56
CD44-219ENST00000525685 VASPP50552 380 aaPredicted RBP11.57□□□□□ -0.56
CD44-219ENST00000525685 ZNF579Q8NAF0 562 aaKnown RBP11.55□□□□□ -0.56
CD44-219ENST00000525685 ZBTB47Q9UFB7 747 aaPredicted RBP11.55□□□□□ -0.56
CD44-219ENST00000525685 GABBR2O75899 941 aa11.54□□□□□ -0.56
CD44-219ENST00000525685 PAK3O75914 559 aaPredicted RBP11.54□□□□□ -0.56
CD44-219ENST00000525685 RASEFQ8IZ41 740 aa11.49□□□□□ -0.57
CD44-219ENST00000525685 NUBP1P53384 320 aa11.48□□□□□ -0.57
CD44-219ENST00000525685 TSPYL2Q9H2G4 693 aaPredicted RBP11.48□□□□□ -0.57
CD44-219ENST00000525685 CLCN6P51797 869 aa11.47□□□□□ -0.57
CD44-219ENST00000525685 PHF12Q96QT6 1004 aa11.46□□□□□ -0.57
CD44-219ENST00000525685 CCDC61Q9Y6R9 512 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms