RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 GTPBP6O43824 516 aaPredicted RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 MAFO75444 373 aaPredicted RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 DGKIO75912 1065 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 FGFR1P11362 822 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 DARSP14868 501 aaKnown RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 EIF4BP23588 611 aaKnown RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 TOB1P50616 345 aaPredicted RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 BTG3Q14201 252 aaPredicted RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 LONRF3Q496Y0 759 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 MAEAQ7L5Y9 396 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 C4orf19Q8IY42 314 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 TMEM192Q8IY95 271 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 CRIPAKQ8N1N5 446 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 RNF169Q8NCN4 708 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 ZNF689Q96CS4 500 aaPredicted RBP12.86□□□□□ -0.35
VCAN-212ENST00000515397 HSD17B14Q9BPX1 270 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 FTHL17Q9BXU8 183 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 ZSWIM4Q9H7M6 989 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 HCSTQ9UBK5 93 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 LRFN2Q9ULH4 789 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 PCDHB6Q9Y5E3 794 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 WDR81Q562E7 1941 aa12.86□□□□□ -0.35
VCAN-212ENST00000515397 TTC3P53804 2025 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 TRANK1O15050 2925 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 MED24O75448 989 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 SRGAP2CP0DJJ0 459 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 SPATA31C1P0DKV0 1188 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 CTNNB1P35222 781 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 SARSP49591 514 aaKnown RBP12.85□□□□□ -0.35
VCAN-212ENST00000515397 DNM2P50570 870 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 POLGP54098 1239 aaPredicted RBP12.85□□□□□ -0.35
VCAN-212ENST00000515397 TFF2Q03403 129 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 GPM6BQ13491 265 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 DSC3Q14574 896 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 NPAS4Q8IUM7 802 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 PRPF31Q8WWY3 499 aaKnown RBP12.85□□□□□ -0.35
VCAN-212ENST00000515397 POLD4Q9HCU8 107 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 RGS18Q9NS28 235 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 FOXD4L1Q9NU39 408 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 SMC3Q9UQE7 1217 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 PCDHB7Q9Y5E2 793 aa12.85□□□□□ -0.35
VCAN-212ENST00000515397 MRPL42Q9Y6G3 142 aaKnown RBP12.85□□□□□ -0.35
VCAN-212ENST00000515397 C9IYK1 514 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 DKC1O60832 514 aaKnown RBP eCLIP12.84□□□□□ -0.35
VCAN-212ENST00000515397 OR52Z1P0C646 297 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 LINC00271P0C7V0 271 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 U2AF2P26368 475 aaKnown RBP eCLIP12.84□□□□□ -0.35
VCAN-212ENST00000515397 ECM1Q16610 540 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 SLC24A5Q71RS6 500 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 OTUD6AQ7L8S5 288 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 CATSPER3Q86XQ3 398 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 SLC7A3Q8WY07 619 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 GCOM2Q9BZD3 368 aaPredicted RBP12.84□□□□□ -0.35
VCAN-212ENST00000515397 DHX33Q9H6R0 707 aaKnown RBP12.84□□□□□ -0.35
VCAN-212ENST00000515397 RC3H2Q9HBD1 1191 aaKnown RBP12.84□□□□□ -0.35
VCAN-212ENST00000515397 ALG13Q9NP73 1137 aaKnown RBP12.84□□□□□ -0.35
VCAN-212ENST00000515397 TTC28Q96AY4 2481 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 ADGRA3Q8IWK6 1321 aa12.84□□□□□ -0.35
VCAN-212ENST00000515397 VCANP13611 3396 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 TBKBP1A7MCY6 615 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 H3BQV1 296 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 GRM6O15303 877 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 STAG3L1P0CL83 205 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 ZSCAN20P17040 1043 aaPredicted RBP12.83□□□□□ -0.36
VCAN-212ENST00000515397 POU3F3P20264 500 aaPredicted RBP12.83□□□□□ -0.36
VCAN-212ENST00000515397 CDC25AP30304 524 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 BMPR1AP36894 532 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 FAM189BP81408 668 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 LAMTOR4Q0VGL1 99 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 PTGDRQ13258 359 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 EMC2Q15006 297 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 IL17AQ16552 155 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 POTEGQ6S5H5 508 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 MINDY3Q9H8M7 445 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 XPNPEP1Q9NQW7 623 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 NOL7Q9UMY1 257 aaKnown RBP12.83□□□□□ -0.36
VCAN-212ENST00000515397 COL4A3BPQ9Y5P4 624 aa12.83□□□□□ -0.36
VCAN-212ENST00000515397 BRWD1Q9NSI6 2320 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 PP2D1A8MPX8 630 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 H3BNC9 293 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 USO1O60763 962 aaKnown RBP12.82□□□□□ -0.36
VCAN-212ENST00000515397 MCM2P49736 904 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 ODR4Q5SWX8 454 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 SPOUT1Q5T280 376 aaKnown RBP12.82□□□□□ -0.36
VCAN-212ENST00000515397 LARP1BQ659C4 914 aaKnown RBP12.82□□□□□ -0.36
VCAN-212ENST00000515397 CATSPER4Q7RTX7 472 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 ASAP3Q8TDY4 903 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 PSPC1Q8WXF1 523 aaKnown RBP12.82□□□□□ -0.36
VCAN-212ENST00000515397 LPPQ93052 612 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 COL25A1Q9BXS0 654 aaPredicted RBP12.82□□□□□ -0.36
VCAN-212ENST00000515397 ATP6V0A4Q9HBG4 840 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 IFT122Q9HBG6 1241 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 GPRC5CQ9NQ84 441 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 REV3LO60673 3130 aa12.82□□□□□ -0.36
VCAN-212ENST00000515397 MEIS3P2A8K0S8 358 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 LYPLA2O95372 231 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 DNAJB1P25685 340 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 RFC5P40937 340 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 RARRES1P49788 294 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms