RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 NEK9Q8TD19 979 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 HAUS1Q96CS2 278 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 INTS2Q9H0H0 1204 aaKnown RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 ADAM22Q9P0K1 906 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 TBK1Q9UHD2 729 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 SSTR3P32745 418 aaPredicted RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 NPEPPSP55786 919 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 VSNL1P62760 191 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 DR1Q01658 176 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 GRB10Q13322 594 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 NNTQ13423 1086 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 R3HDM1Q15032 1099 aaKnown RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 SLC15A2Q16348 729 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 RHOT2Q8IXI1 618 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 MRPL47Q9HD33 250 aaKnown RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 KCNQ5Q9NR82 932 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 TLR3O15455 904 aaKnown RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 RPA1P27694 616 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 ANGEL2Q5VTE6 544 aaKnown RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 PLA2G4FQ68DD2 849 aa14.22□□□□□ -0.13
NPHP4-203ENST00000378169 DDX4Q9NQI0 724 aaKnown RBP14.22□□□□□ -0.13
NPHP4-203ENST00000378169 KRT1P04264 644 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 SFNP31947 248 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 LIG3P49916 1009 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 FXR2P51116 673 aaKnown RBP eCLIP14.21□□□□□ -0.13
NPHP4-203ENST00000378169 HACE1Q8IYU2 909 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 DEFB129Q9H1M3 183 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 SMARCAL1Q9NZC9 954 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 ADAM21Q9UKJ8 722 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 MAD1L1Q9Y6D9 718 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 CYTH3O43739 400 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 ABL1P00519 1130 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 UCHL3P15374 230 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 SMARCA1P28370 1054 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 SEMA3FQ13275 785 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 TRIM50Q86XT4 487 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 NACA2Q9H009 215 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 ZNF302Q9NR11 478 aa14.21□□□□□ -0.13
NPHP4-203ENST00000378169 A0A087X0B3 334 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 RSPH10B2B2RC85 870 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 ANKRD65E5RJM6 399 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 NR3C2P08235 984 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 PLEKP08567 350 aaPredicted RBP14.21□□□□□ -0.14
NPHP4-203ENST00000378169 RSPH10BP0C881 870 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 KCNJ6P48051 423 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 DDR1Q08345 913 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 COG2Q14746 738 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 SLFN12LQ6IEE8 588 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 FRMD5Q7Z6J6 570 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 CACNA2D3Q8IZS8 1091 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 NME8Q8N427 588 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 RNF10Q8N5U6 811 aaKnown RBP14.21□□□□□ -0.14
NPHP4-203ENST00000378169 SPATA4Q8NEY3 305 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 TRIM11Q96F44 468 aa14.21□□□□□ -0.14
NPHP4-203ENST00000378169 POLR3FQ9H1D9 316 aaPredicted RBP14.21□□□□□ -0.14
NPHP4-203ENST00000378169 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.21□□□□□ -0.14
NPHP4-203ENST00000378169 RWDD2BP57060 319 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 NFX1Q12986 1120 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 KRT39Q6A163 491 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 RFX6Q8HWS3 928 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 RHPN2Q8IUC4 686 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 CCDC110Q8TBZ0 833 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 ZDHHC15Q96MV8 337 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 GOLPH3Q9H4A6 298 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 RPF1Q9H9Y2 349 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 SEPT10Q9P0V9 454 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 FBXO40Q9UH90 709 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 NOVA2Q9UNW9 492 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 FHOD1Q9Y613 1164 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 UBR1Q8IWV7 1749 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 ZNF131P52739 623 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 ZKSCAN8Q15776 578 aaPredicted RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 FYB2Q5VWT5 728 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 OR6B2Q6IFH4 312 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 DAGLBQ8NCG7 672 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 PSPC1Q8WXF1 523 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 TUFT1Q9NNX1 390 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 INTS9Q9NV88 658 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 KBTBD4Q9NVX7 518 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 WDR46O15213 610 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 MAN1A1P33908 653 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 GPC5P78333 572 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 CDO1Q16878 200 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 GKAP1Q5VSY0 366 aaPredicted RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 MS4A14Q96JA4 679 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 TEX13BQ9BXU2 312 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 RIC1Q4ADV7 1423 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 ITIH6Q6UXX5 1313 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 TBX3O15119 743 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 MSH4O15457 936 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 GMPSP49915 693 aaPredicted RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 YWHAGP61981 247 aaKnown RBP eCLIP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 EMBQ6PCB8 327 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 NYAP1Q6ZVC0 841 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 ATG4CQ96DT6 458 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 HEXIM2Q96MH2 286 aaKnown RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 JPH1Q9HDC5 661 aaPredicted RBP14.2□□□□□ -0.14
NPHP4-203ENST00000378169 GGA3Q9NZ52 723 aa14.2□□□□□ -0.14
NPHP4-203ENST00000378169 MED24O75448 989 aa14.19□□□□□ -0.14
NPHP4-203ENST00000378169 ACSL3O95573 720 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms