RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 NISCHQ9Y2I1 1504 aa23.91■■□□□ 1.42
NPHP4-203ENST00000378169 DCAF8L2P0C7V8 631 aa23.6■■□□□ 1.37
NPHP4-203ENST00000378169 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
NPHP4-203ENST00000378169 SHROOM4Q9ULL8 1493 aa22.55■■□□□ 1.2
NPHP4-203ENST00000378169 EHMT2Q96KQ7 1210 aa21.67■■□□□ 1.06
NPHP4-203ENST00000378169 FAM9AQ8IZU1 332 aaPredicted RBP21.28■■□□□ 1
NPHP4-203ENST00000378169 PCGF6Q9BYE7 350 aa20.98■□□□□ 0.95
NPHP4-203ENST00000378169 TRIM41Q8WV44 630 aa20.89■□□□□ 0.93
NPHP4-203ENST00000378169 TTBK1Q5TCY1 1321 aaPredicted RBP20.88■□□□□ 0.93
NPHP4-203ENST00000378169 RANGAP1P46060 587 aaPredicted RBP20.67■□□□□ 0.9
NPHP4-203ENST00000378169 APLP2Q06481 763 aa20.67■□□□□ 0.9
NPHP4-203ENST00000378169 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
NPHP4-203ENST00000378169 LOC105371045A0A1W2PR82 267 aa20.47■□□□□ 0.87
NPHP4-203ENST00000378169 UBTFP17480 764 aaKnown RBP20.46■□□□□ 0.87
NPHP4-203ENST00000378169 PPARGC1BQ86YN6 1023 aaKnown RBP20.44■□□□□ 0.86
NPHP4-203ENST00000378169 ABCC9O60706 1549 aa20.33■□□□□ 0.85
NPHP4-203ENST00000378169 CCER1Q8TC90 406 aaPredicted RBP20.27■□□□□ 0.84
NPHP4-203ENST00000378169 ATP1B4Q9UN42 357 aaPredicted RBP20.22■□□□□ 0.83
NPHP4-203ENST00000378169 PABPN1Q86U42 306 aaKnown RBP eCLIP20.13■□□□□ 0.81
NPHP4-203ENST00000378169 TRIM26Q12899 539 aaPredicted RBP20.1■□□□□ 0.81
NPHP4-203ENST00000378169 ZEB1P37275 1124 aaPredicted RBP20.09■□□□□ 0.81
NPHP4-203ENST00000378169 HRCP23327 699 aa19.97■□□□□ 0.79
NPHP4-203ENST00000378169 ZCCHC6Q5VYS8 1495 aaKnown RBP19.86■□□□□ 0.77
NPHP4-203ENST00000378169 ITGAEP38570 1179 aa19.78■□□□□ 0.76
NPHP4-203ENST00000378169 HNRNPUL2Q1KMD3 747 aaKnown RBP19.77■□□□□ 0.75
NPHP4-203ENST00000378169 CENPBP07199 599 aaPredicted RBP19.71■□□□□ 0.75
NPHP4-203ENST00000378169 YTHDC1Q96MU7 727 aaKnown RBP19.69■□□□□ 0.74
NPHP4-203ENST00000378169 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.67■□□□□ 0.74
NPHP4-203ENST00000378169 PELP1Q8IZL8 1130 aaKnown RBP19.66■□□□□ 0.74
NPHP4-203ENST00000378169 SCRIBQ14160 1630 aa19.6■□□□□ 0.73
NPHP4-203ENST00000378169 CCDC180Q9P1Z9 1646 aa19.55■□□□□ 0.72
NPHP4-203ENST00000378169 CSRNP3Q8WYN3 585 aa19.38■□□□□ 0.69
NPHP4-203ENST00000378169 FAM50AQ14320 339 aaKnown RBP19.27■□□□□ 0.68
NPHP4-203ENST00000378169 MYO15BQ96JP2 1530 aa19.23■□□□□ 0.67
NPHP4-203ENST00000378169 DIEXFQ68CQ4 756 aaKnown RBP19.22■□□□□ 0.67
NPHP4-203ENST00000378169 P3H3Q8IVL6 736 aa19.19■□□□□ 0.66
NPHP4-203ENST00000378169 RSF1Q96T23 1441 aaPredicted RBP19.19■□□□□ 0.66
NPHP4-203ENST00000378169 POLR3GLQ9BT43 218 aa19.18■□□□□ 0.66
NPHP4-203ENST00000378169 CNGB1Q14028 1251 aaPredicted RBP19.17■□□□□ 0.66
NPHP4-203ENST00000378169 NEFLP07196 543 aa19.14■□□□□ 0.65
NPHP4-203ENST00000378169 MYT1LQ9UL68 1186 aa19.13■□□□□ 0.65
NPHP4-203ENST00000378169 NEUROD1Q13562 356 aa19.09■□□□□ 0.65
NPHP4-203ENST00000378169 FBLN2P98095 1184 aa19.06■□□□□ 0.64
NPHP4-203ENST00000378169 ARID3CA6NKF2 412 aa19.05■□□□□ 0.64
NPHP4-203ENST00000378169 DCAF1Q9Y4B6 1507 aa19■□□□□ 0.63
NPHP4-203ENST00000378169 TRIM52Q96A61 297 aa19■□□□□ 0.63
NPHP4-203ENST00000378169 RB1CC1Q8TDY2 1594 aa18.95■□□□□ 0.62
NPHP4-203ENST00000378169 CECR2Q9BXF3 1484 aa18.94■□□□□ 0.62
NPHP4-203ENST00000378169 ERICH6Q7L0X2 663 aa18.9■□□□□ 0.62
NPHP4-203ENST00000378169 NACADO15069 1562 aa18.89■□□□□ 0.61
NPHP4-203ENST00000378169 ZNF316A6NFI3 1004 aaPredicted RBP18.86■□□□□ 0.61
NPHP4-203ENST00000378169 ZNF326Q5BKZ1 582 aaKnown RBP18.79■□□□□ 0.6
NPHP4-203ENST00000378169 GTF3C3Q9Y5Q9 886 aa18.75■□□□□ 0.59
NPHP4-203ENST00000378169 ZNF777Q9ULD5 760 aaPredicted RBP18.7■□□□□ 0.58
NPHP4-203ENST00000378169 CLIP1P30622 1438 aa18.7■□□□□ 0.58
NPHP4-203ENST00000378169 WRNQ14191 1432 aaPredicted RBP eCLIP18.7■□□□□ 0.58
NPHP4-203ENST00000378169 CEP162Q5TB80 1403 aa18.67■□□□□ 0.58
NPHP4-203ENST00000378169 MROH2BQ7Z745 1585 aa18.64■□□□□ 0.58
NPHP4-203ENST00000378169 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.58
NPHP4-203ENST00000378169 BAZ1AQ9NRL2 1556 aaPredicted RBP18.64■□□□□ 0.57
NPHP4-203ENST00000378169 SLC4A1APQ9BWU0 796 aaKnown RBP18.62■□□□□ 0.57
NPHP4-203ENST00000378169 BCANQ96GW7 911 aa18.61■□□□□ 0.57
NPHP4-203ENST00000378169 ANP32CO43423 234 aa18.61■□□□□ 0.57
NPHP4-203ENST00000378169 CHIC2Q9UKJ5 165 aa18.58■□□□□ 0.56
NPHP4-203ENST00000378169 GOLGA3Q08378 1498 aa18.55■□□□□ 0.56
NPHP4-203ENST00000378169 ACIN1Q9UKV3 1341 aaKnown RBP18.55■□□□□ 0.56
NPHP4-203ENST00000378169 EEA1Q15075 1411 aa18.55■□□□□ 0.56
NPHP4-203ENST00000378169 SOGA1O94964 1423 aa18.54■□□□□ 0.56
NPHP4-203ENST00000378169 CDK11AQ9UQ88 783 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-203ENST00000378169 TNIKQ9UKE5 1360 aa18.51■□□□□ 0.55
NPHP4-203ENST00000378169 DDX10Q13206 875 aaKnown RBP18.47■□□□□ 0.55
NPHP4-203ENST00000378169 MTUS2Q5JR59 1369 aa18.45■□□□□ 0.54
NPHP4-203ENST00000378169 CCDC88BA6NC98 1476 aa18.45■□□□□ 0.54
NPHP4-203ENST00000378169 TONSLQ96HA7 1378 aa18.45■□□□□ 0.54
NPHP4-203ENST00000378169 HIRIP3Q9BW71 556 aaPredicted RBP18.43■□□□□ 0.54
NPHP4-203ENST00000378169 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
NPHP4-203ENST00000378169 KIF27Q86VH2 1401 aa18.42■□□□□ 0.54
NPHP4-203ENST00000378169 CEP164Q9UPV0 1460 aa18.4■□□□□ 0.54
NPHP4-203ENST00000378169 CHMP7Q8WUX9 453 aaPredicted RBP18.39■□□□□ 0.54
NPHP4-203ENST00000378169 MIER1Q8N108 512 aa18.36■□□□□ 0.53
NPHP4-203ENST00000378169 WIZO95785 1651 aa18.36■□□□□ 0.53
NPHP4-203ENST00000378169 RRP7BPQ9NSQ0 103 aa18.35■□□□□ 0.53
NPHP4-203ENST00000378169 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.27■□□□□ 0.52
NPHP4-203ENST00000378169 DAXXQ9UER7 740 aaPredicted RBP18.26■□□□□ 0.51
NPHP4-203ENST00000378169 CUX2O14529 1486 aa18.23■□□□□ 0.51
NPHP4-203ENST00000378169 TSPY4P0CV99 314 aa18.23■□□□□ 0.51
NPHP4-203ENST00000378169 TSPY10P0CW01 314 aa18.23■□□□□ 0.51
NPHP4-203ENST00000378169 HNRNPUQ00839 825 aaKnown RBP eCLIP18.21■□□□□ 0.51
NPHP4-203ENST00000378169 KDM2AQ9Y2K7 1162 aa18.21■□□□□ 0.51
NPHP4-203ENST00000378169 CARMIL1Q5VZK9 1371 aa18.21■□□□□ 0.5
NPHP4-203ENST00000378169 FAM9BQ8IZU0 186 aa18.2■□□□□ 0.5
NPHP4-203ENST00000378169 CLSPNQ9HAW4 1339 aa18.2■□□□□ 0.5
NPHP4-203ENST00000378169 KANK4Q5T7N3 995 aaPredicted RBP18.19■□□□□ 0.5
NPHP4-203ENST00000378169 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
NPHP4-203ENST00000378169 CHGAP10645 457 aaKnown RBP18.18■□□□□ 0.5
NPHP4-203ENST00000378169 SIN3AQ96ST3 1273 aa18.18■□□□□ 0.5
NPHP4-203ENST00000378169 FKBP8Q14318 412 aa18.17■□□□□ 0.5
NPHP4-203ENST00000378169 KCNH8Q96L42 1107 aa18.15■□□□□ 0.5
NPHP4-203ENST00000378169 TOP2AP11388 1531 aaKnown RBP18.14■□□□□ 0.49
NPHP4-203ENST00000378169 SALL2Q9Y467 1007 aaPredicted RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms