RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Mis18aQ9CZJ6 204 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Ccdc70Q9D9B0 223 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Kif20bQ80WE4 1774 aaKnown RBP11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Osbpl9A2A8Z1 736 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Ccnyl1D3YUJ3 367 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Timm44O35857 452 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Pfdn6Q03958 127 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Tcf12Q61286 706 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Ppp2r2aQ6P1F6 447 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Fbxo44Q8BK26 255 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Lman1lQ8VCD3 505 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 CbsQ91WT9 561 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Dhx30Q99PU8 1217 aaKnown RBP11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Polr3eQ9CZT4 710 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Dnajc7Q9QYI3 494 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 DgkkE9Q7N4 1118 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Gm5134E9QAB5 671 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Igfbp6P47880 238 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Arl4cP61208 192 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Atp11aP98197 1187 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Gtpbp6Q3U6U5 514 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 PighQ5M9N4 188 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Mmgt1Q8K273 131 aaKnown RBP11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Gga1Q8R0H9 635 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Slc5a5Q99PN0 618 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Cpb2Q9JHH6 422 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Ifnb1P01575 182 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Abcb1bP06795 1276 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Grin1P35438 938 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Rit2P70425 217 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Rtel1Q0VGM9 1203 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Rc3h1Q4VGL6 1130 aaKnown RBP11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 FcgrtQ61559 365 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Asnsd1Q8BFS9 627 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 P2ry10Q8BFU7 328 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Upb1Q8VC97 393 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Hip1Q8VD75 1029 aaKnown RBP11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Ccdc65Q8VHI7 493 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Pde6cQ91ZQ1 861 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Homer2Q9QWW1 354 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Snx1Q9WV80 522 aa11.03□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Nme9A0A1L1SUL6 329 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Arhgap4B1AUY3 965 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Trim5E9PV98 497 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Krt90E9Q1Z0 538 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Gap43P06837 227 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 LtbrP50284 415 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 StamP70297 548 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 MpndQ3TV65 487 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Upf3bQ3ULL6 472 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Nyap1Q6PFX7 833 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Pomgnt1Q91X88 660 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Extl2Q9ES89 330 aa11.02□□□□□ -0.64
Ccdc40-201ENSMUST00000035935 Cyp2d9P11714 504 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Nedd1P33215 660 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Ppp1r1bQ60829 194 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Krt32Q62168 407 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Rhot1Q8BG51 631 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Q8BWG4 1187 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Bbs7Q8K2G4 715 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 St13Q99L47 371 aaKnown RBP11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Sf3a3Q9D554 501 aaKnown RBP11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 MrgbpQ9DAT2 204 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Caln1Q9JJG7 219 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Dach1Q9QYB2 751 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 4931408C20RikE9PWP9 1381 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Lrrc63A6H694 637 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 L1camP11627 1260 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Krt86P97861 486 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Krt26Q3TRJ4 462 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 SrlQ7TQ48 910 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Klhl29Q80T74 875 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Fnbp1Q80TY0 616 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Snf8Q9CZ28 258 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Thumpd2Q9CZB3 528 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Utp11Q9CZJ1 253 aaKnown RBP11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Mdc1Q5PSV9 1707 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Cep85lA0A1W2P884 806 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Myo1eE9Q634 1107 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Ca8P28651 291 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Vamp7P70280 220 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Micall2Q3TN34 1009 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Slc2a13Q3UHK1 637 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Trim38Q5SZ99 471 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Setd3Q91WC0 594 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Polr3fQ921X6 316 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Rmdn1Q9DCV4 305 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Dnajc12Q9R022 198 aa11.02□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 6030498E09RikB1AX85 169 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Gm5926E9PWJ8 236 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Efna5O08543 228 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Palb2Q3U0P1 1104 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Ttf2Q5NC05 1138 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 ItgaeQ60677 1167 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Psen2Q61144 448 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Wdr27Q8C5V5 780 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 OscarQ8VBT3 265 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 YwhabQ9CQV8 246 aaKnown RBP11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Trp53inp1Q9QXE4 239 aa11.01□□□□□ -0.65
Ccdc40-201ENSMUST00000035935 Rfwd2Q9R1A8 733 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 22,080 RNA–protein pairs in 36 ms