Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm25239-201ENSMUST00000174915 86 ntBASIC39.81■■■■□ 3.96
Upf3bQ3ULL6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.62■■■■□ 3.45
Upf3bQ3ULL6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
Upf3bQ3ULL6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Upf3bQ3ULL6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
Upf3bQ3ULL6 Gm15042-201ENSMUST00000120212 883 ntBASIC35.2■■■■□ 3.23
Upf3bQ3ULL6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.16■■■■□ 3.22
Upf3bQ3ULL6 Gm15045-201ENSMUST00000117359 883 ntBASIC34.48■■■■□ 3.11
Upf3bQ3ULL6 Gm24109-201ENSMUST00000175489 103 ntBASIC34.3■■■■□ 3.08
Upf3bQ3ULL6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
Upf3bQ3ULL6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
Upf3bQ3ULL6 Psd-208ENSMUST00000224556 2034 ntBASIC33.67■■■□□ 2.98
Upf3bQ3ULL6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
Upf3bQ3ULL6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.48■■■□□ 2.95
Upf3bQ3ULL6 Gm23366-201ENSMUST00000175022 89 ntBASIC33.32■■■□□ 2.92
Upf3bQ3ULL6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
Upf3bQ3ULL6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Upf3bQ3ULL6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Upf3bQ3ULL6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Upf3bQ3ULL6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.01■■■□□ 2.88
Upf3bQ3ULL6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Upf3bQ3ULL6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.82■■■□□ 2.84
Upf3bQ3ULL6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Upf3bQ3ULL6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.75■■■□□ 2.83
Upf3bQ3ULL6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.74■■■□□ 2.83
Upf3bQ3ULL6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.65■■■□□ 2.82
Upf3bQ3ULL6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Upf3bQ3ULL6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Upf3bQ3ULL6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Upf3bQ3ULL6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
Upf3bQ3ULL6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Upf3bQ3ULL6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.34■■■□□ 2.77
Upf3bQ3ULL6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Upf3bQ3ULL6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.24■■■□□ 2.75
Upf3bQ3ULL6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
Upf3bQ3ULL6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Upf3bQ3ULL6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Upf3bQ3ULL6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Upf3bQ3ULL6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.72■■■□□ 2.67
Upf3bQ3ULL6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Upf3bQ3ULL6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.65■■■□□ 2.66
Upf3bQ3ULL6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Upf3bQ3ULL6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Upf3bQ3ULL6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.43■■■□□ 2.62
Upf3bQ3ULL6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Upf3bQ3ULL6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.34■■■□□ 2.61
Upf3bQ3ULL6 Gm25238-201ENSMUST00000174914 89 ntBASIC31.3■■■□□ 2.6
Upf3bQ3ULL6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.25■■■□□ 2.59
Upf3bQ3ULL6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
Upf3bQ3ULL6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Upf3bQ3ULL6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Upf3bQ3ULL6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Upf3bQ3ULL6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Upf3bQ3ULL6 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.16■■■□□ 2.58
Upf3bQ3ULL6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Upf3bQ3ULL6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Upf3bQ3ULL6 Gm27325-201ENSMUST00000175467 74 ntBASIC30.93■■■□□ 2.54
Upf3bQ3ULL6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Upf3bQ3ULL6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Upf3bQ3ULL6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Upf3bQ3ULL6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.83■■■□□ 2.53
Upf3bQ3ULL6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Upf3bQ3ULL6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.78■■■□□ 2.52
Upf3bQ3ULL6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.75■■■□□ 2.51
Upf3bQ3ULL6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.72■■■□□ 2.51
Upf3bQ3ULL6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Upf3bQ3ULL6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
Upf3bQ3ULL6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.65■■■□□ 2.5
Upf3bQ3ULL6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Upf3bQ3ULL6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Upf3bQ3ULL6 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Upf3bQ3ULL6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Upf3bQ3ULL6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Upf3bQ3ULL6 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.52■■■□□ 2.48
Upf3bQ3ULL6 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Upf3bQ3ULL6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Upf3bQ3ULL6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.42■■■□□ 2.46
Upf3bQ3ULL6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.42■■■□□ 2.46
Upf3bQ3ULL6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Upf3bQ3ULL6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.2■■■□□ 2.42
Upf3bQ3ULL6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Upf3bQ3ULL6 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Upf3bQ3ULL6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
Upf3bQ3ULL6 Rab21-202ENSMUST00000218831 843 ntBASIC30.1■■■□□ 2.41
Upf3bQ3ULL6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Upf3bQ3ULL6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Upf3bQ3ULL6 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Upf3bQ3ULL6 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Upf3bQ3ULL6 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.96■■■□□ 2.39
Upf3bQ3ULL6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.95■■■□□ 2.39
Upf3bQ3ULL6 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Upf3bQ3ULL6 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
Upf3bQ3ULL6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.85■■■□□ 2.37
Upf3bQ3ULL6 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Upf3bQ3ULL6 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Upf3bQ3ULL6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
Upf3bQ3ULL6 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Upf3bQ3ULL6 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
Upf3bQ3ULL6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
Upf3bQ3ULL6 Gm25262-201ENSMUST00000174934 133 ntBASIC29.79■■■□□ 2.36
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms