Protein–RNA interactions for Protein: Q4VGL6

Rc3h1, Roquin-1, mousemouse

Known RBP Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rc3h1Q4VGL6 Gm25239-201ENSMUST00000174915 86 ntBASIC44.79■■■■■ 4.76
Rc3h1Q4VGL6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC41.38■■■■■ 4.21
Rc3h1Q4VGL6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
Rc3h1Q4VGL6 Gm15042-201ENSMUST00000120212 883 ntBASIC39.19■■■■□ 3.86
Rc3h1Q4VGL6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
Rc3h1Q4VGL6 Gm24109-201ENSMUST00000175489 103 ntBASIC38.81■■■■□ 3.8
Rc3h1Q4VGL6 Gm15045-201ENSMUST00000117359 883 ntBASIC38.42■■■■□ 3.74
Rc3h1Q4VGL6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
Rc3h1Q4VGL6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37.94■■■■□ 3.66
Rc3h1Q4VGL6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC37.84■■■■□ 3.65
Rc3h1Q4VGL6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37.79■■■■□ 3.64
Rc3h1Q4VGL6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC37.4■■■■□ 3.58
Rc3h1Q4VGL6 Gm23366-201ENSMUST00000175022 89 ntBASIC37.35■■■■□ 3.57
Rc3h1Q4VGL6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.18■■■■□ 3.54
Rc3h1Q4VGL6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
Rc3h1Q4VGL6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36.59■■■■□ 3.45
Rc3h1Q4VGL6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
Rc3h1Q4VGL6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.38■■■■□ 3.41
Rc3h1Q4VGL6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
Rc3h1Q4VGL6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.16■■■■□ 3.38
Rc3h1Q4VGL6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC36.14■■■■□ 3.38
Rc3h1Q4VGL6 Psd-208ENSMUST00000224556 2034 ntBASIC36.11■■■■□ 3.37
Rc3h1Q4VGL6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.07■■■■□ 3.37
Rc3h1Q4VGL6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36.03■■■■□ 3.36
Rc3h1Q4VGL6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
Rc3h1Q4VGL6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.99■■■■□ 3.35
Rc3h1Q4VGL6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.96■■■■□ 3.35
Rc3h1Q4VGL6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.91■■■■□ 3.34
Rc3h1Q4VGL6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.78■■■■□ 3.32
Rc3h1Q4VGL6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.66■■■■□ 3.3
Rc3h1Q4VGL6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35.6■■■■□ 3.29
Rc3h1Q4VGL6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
Rc3h1Q4VGL6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
Rc3h1Q4VGL6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Rc3h1Q4VGL6 Gm25238-201ENSMUST00000174914 89 ntBASIC35.37■■■■□ 3.25
Rc3h1Q4VGL6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC35.2■■■■□ 3.23
Rc3h1Q4VGL6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.14■■■■□ 3.22
Rc3h1Q4VGL6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
Rc3h1Q4VGL6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Rc3h1Q4VGL6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Rc3h1Q4VGL6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.95■■■■□ 3.18
Rc3h1Q4VGL6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
Rc3h1Q4VGL6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
Rc3h1Q4VGL6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34.56■■■■□ 3.12
Rc3h1Q4VGL6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
Rc3h1Q4VGL6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34.49■■■■□ 3.11
Rc3h1Q4VGL6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34.49■■■■□ 3.11
Rc3h1Q4VGL6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34.43■■■■□ 3.1
Rc3h1Q4VGL6 Gm27325-201ENSMUST00000175467 74 ntBASIC34.4■■■■□ 3.1
Rc3h1Q4VGL6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.32■■■■□ 3.08
Rc3h1Q4VGL6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
Rc3h1Q4VGL6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
Rc3h1Q4VGL6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.16■■■■□ 3.06
Rc3h1Q4VGL6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
Rc3h1Q4VGL6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
Rc3h1Q4VGL6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.05
Rc3h1Q4VGL6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Rc3h1Q4VGL6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.04■■■■□ 3.04
Rc3h1Q4VGL6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33.98■■■■□ 3.03
Rc3h1Q4VGL6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
Rc3h1Q4VGL6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
Rc3h1Q4VGL6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.78■■■■□ 3
Rc3h1Q4VGL6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Rc3h1Q4VGL6 Gm25262-201ENSMUST00000174934 133 ntBASIC33.71■■■□□ 2.99
Rc3h1Q4VGL6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.7■■■□□ 2.98
Rc3h1Q4VGL6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
Rc3h1Q4VGL6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
Rc3h1Q4VGL6 Rab21-202ENSMUST00000218831 843 ntBASIC33.66■■■□□ 2.98
Rc3h1Q4VGL6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
Rc3h1Q4VGL6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.61■■■□□ 2.97
Rc3h1Q4VGL6 Gm10524-201ENSMUST00000181931 1893 ntBASIC33.61■■■□□ 2.97
Rc3h1Q4VGL6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Rc3h1Q4VGL6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC33.55■■■□□ 2.96
Rc3h1Q4VGL6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33.54■■■□□ 2.96
Rc3h1Q4VGL6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Rc3h1Q4VGL6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Rc3h1Q4VGL6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.46■■■□□ 2.95
Rc3h1Q4VGL6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC33.43■■■□□ 2.94
Rc3h1Q4VGL6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Rc3h1Q4VGL6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.39■■■□□ 2.94
Rc3h1Q4VGL6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
Rc3h1Q4VGL6 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.34■■■□□ 2.93
Rc3h1Q4VGL6 Gm42596-201ENSMUST00000196305 1958 ntBASIC33.28■■■□□ 2.92
Rc3h1Q4VGL6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33.28■■■□□ 2.92
Rc3h1Q4VGL6 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
Rc3h1Q4VGL6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Rc3h1Q4VGL6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC33.18■■■□□ 2.9
Rc3h1Q4VGL6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
Rc3h1Q4VGL6 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33.12■■■□□ 2.89
Rc3h1Q4VGL6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.08■■■□□ 2.89
Rc3h1Q4VGL6 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Rc3h1Q4VGL6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC33.07■■■□□ 2.88
Rc3h1Q4VGL6 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
Rc3h1Q4VGL6 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC33.03■■■□□ 2.88
Rc3h1Q4VGL6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Rc3h1Q4VGL6 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32.88■■■□□ 2.85
Rc3h1Q4VGL6 Gm26115-201ENSMUST00000175605 87 ntBASIC32.82■■■□□ 2.84
Rc3h1Q4VGL6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Rc3h1Q4VGL6 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Rc3h1Q4VGL6 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC32.79■■■□□ 2.84
Retrieved 100 of 76,532 protein–RNA pairs in 9.7 ms