Protein–RNA interactions for Protein: Q4VGL6

Rc3h1, Roquin-1, mousemouse

Known RBP Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rc3h1Q4VGL6 Gm25239-201ENSMUST00000174915 86 ntBASIC44,79■■■■■ 4,76
Rc3h1Q4VGL6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC41,38■■■■■ 4,21
Rc3h1Q4VGL6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40,75■■■■■ 4,11
Rc3h1Q4VGL6 Gm15042-201ENSMUST00000120212 883 ntBASIC39,19■■■■□ 3,86
Rc3h1Q4VGL6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39,15■■■■□ 3,86
Rc3h1Q4VGL6 Gm24109-201ENSMUST00000175489 103 ntBASIC38,81■■■■□ 3,8
Rc3h1Q4VGL6 Gm15045-201ENSMUST00000117359 883 ntBASIC38,42■■■■□ 3,74
Rc3h1Q4VGL6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38,36■■■■□ 3,73
Rc3h1Q4VGL6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37,94■■■■□ 3,66
Rc3h1Q4VGL6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC37,84■■■■□ 3,65
Rc3h1Q4VGL6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37,79■■■■□ 3,64
Rc3h1Q4VGL6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC37,4■■■■□ 3,58
Rc3h1Q4VGL6 Gm23366-201ENSMUST00000175022 89 ntBASIC37,35■■■■□ 3,57
Rc3h1Q4VGL6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37,18■■■■□ 3,54
Rc3h1Q4VGL6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36,9■■■■□ 3,5
Rc3h1Q4VGL6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36,59■■■■□ 3,45
Rc3h1Q4VGL6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36,59■■■■□ 3,45
Rc3h1Q4VGL6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36,38■■■■□ 3,41
Rc3h1Q4VGL6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC36,28■■■■□ 3,4
Rc3h1Q4VGL6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36,16■■■■□ 3,38
Rc3h1Q4VGL6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC36,14■■■■□ 3,38
Rc3h1Q4VGL6 Psd-208ENSMUST00000224556 2034 ntBASIC36,11■■■■□ 3,37
Rc3h1Q4VGL6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36,07■■■■□ 3,37
Rc3h1Q4VGL6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36,03■■■■□ 3,36
Rc3h1Q4VGL6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36,03■■■■□ 3,36
Rc3h1Q4VGL6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35,99■■■■□ 3,35
Rc3h1Q4VGL6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35,96■■■■□ 3,35
Rc3h1Q4VGL6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35,91■■■■□ 3,34
Rc3h1Q4VGL6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35,78■■■■□ 3,32
Rc3h1Q4VGL6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35,66■■■■□ 3,3
Rc3h1Q4VGL6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35,6■■■■□ 3,29
Rc3h1Q4VGL6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35,51■■■■□ 3,28
Rc3h1Q4VGL6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC35,48■■■■□ 3,27
Rc3h1Q4VGL6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC35,42■■■■□ 3,26
Rc3h1Q4VGL6 Gm25238-201ENSMUST00000174914 89 ntBASIC35,37■■■■□ 3,25
Rc3h1Q4VGL6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC35,2■■■■□ 3,23
Rc3h1Q4VGL6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35,14■■■■□ 3,22
Rc3h1Q4VGL6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35,04■■■■□ 3,2
Rc3h1Q4VGL6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34,99■■■■□ 3,19
Rc3h1Q4VGL6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34,99■■■■□ 3,19
Rc3h1Q4VGL6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34,95■■■■□ 3,18
Rc3h1Q4VGL6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34,73■■■■□ 3,15
Rc3h1Q4VGL6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34,62■■■■□ 3,13
Rc3h1Q4VGL6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34,56■■■■□ 3,12
Rc3h1Q4VGL6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34,52■■■■□ 3,12
Rc3h1Q4VGL6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34,49■■■■□ 3,11
Rc3h1Q4VGL6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34,49■■■■□ 3,11
Rc3h1Q4VGL6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34,43■■■■□ 3,1
Rc3h1Q4VGL6 Gm27325-201ENSMUST00000175467 74 ntBASIC34,4■■■■□ 3,1
Rc3h1Q4VGL6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34,32■■■■□ 3,08
Rc3h1Q4VGL6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34,3■■■■□ 3,08
Rc3h1Q4VGL6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC34,29■■■■□ 3,08
Rc3h1Q4VGL6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34,16■■■■□ 3,06
Rc3h1Q4VGL6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34,12■■■■□ 3,05
Rc3h1Q4VGL6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34,08■■■■□ 3,05
Rc3h1Q4VGL6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC34,07■■■■□ 3,05
Rc3h1Q4VGL6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34,06■■■■□ 3,04
Rc3h1Q4VGL6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34,04■■■■□ 3,04
Rc3h1Q4VGL6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33,98■■■■□ 3,03
Rc3h1Q4VGL6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33,97■■■■□ 3,03
Rc3h1Q4VGL6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC33,85■■■■□ 3,01
Rc3h1Q4VGL6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33,78■■■■□ 3
Rc3h1Q4VGL6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33,72■■■□□ 2,99
Rc3h1Q4VGL6 Gm25262-201ENSMUST00000174934 133 ntBASIC33,71■■■□□ 2,99
Rc3h1Q4VGL6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33,7■■■□□ 2,98
Rc3h1Q4VGL6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33,69■■■□□ 2,98
Rc3h1Q4VGL6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33,67■■■□□ 2,98
Rc3h1Q4VGL6 Rab21-202ENSMUST00000218831 843 ntBASIC33,66■■■□□ 2,98
Rc3h1Q4VGL6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33,66■■■□□ 2,98
Rc3h1Q4VGL6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33,61■■■□□ 2,97
Rc3h1Q4VGL6 Gm10524-201ENSMUST00000181931 1893 ntBASIC33,61■■■□□ 2,97
Rc3h1Q4VGL6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33,58■■■□□ 2,97
Rc3h1Q4VGL6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC33,55■■■□□ 2,96
Rc3h1Q4VGL6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33,54■■■□□ 2,96
Rc3h1Q4VGL6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33,53■■■□□ 2,96
Rc3h1Q4VGL6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33,53■■■□□ 2,96
Rc3h1Q4VGL6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33,46■■■□□ 2,95
Rc3h1Q4VGL6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC33,43■■■□□ 2,94
Rc3h1Q4VGL6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33,39■■■□□ 2,94
Rc3h1Q4VGL6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33,39■■■□□ 2,94
Rc3h1Q4VGL6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33,37■■■□□ 2,93
Rc3h1Q4VGL6 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33,34■■■□□ 2,93
Rc3h1Q4VGL6 Gm42596-201ENSMUST00000196305 1958 ntBASIC33,28■■■□□ 2,92
Rc3h1Q4VGL6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33,28■■■□□ 2,92
Rc3h1Q4VGL6 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33,23■■■□□ 2,91
Rc3h1Q4VGL6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33,21■■■□□ 2,91
Rc3h1Q4VGL6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC33,18■■■□□ 2,9
Rc3h1Q4VGL6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33,15■■■□□ 2,9
Rc3h1Q4VGL6 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33,12■■■□□ 2,89
Rc3h1Q4VGL6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33,08■■■□□ 2,89
Rc3h1Q4VGL6 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33,07■■■□□ 2,88
Rc3h1Q4VGL6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC33,07■■■□□ 2,88
Rc3h1Q4VGL6 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33,03■■■□□ 2,88
Rc3h1Q4VGL6 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC33,03■■■□□ 2,88
Rc3h1Q4VGL6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC33,02■■■□□ 2,88
Rc3h1Q4VGL6 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32,88■■■□□ 2,85
Rc3h1Q4VGL6 Gm26115-201ENSMUST00000175605 87 ntBASIC32,82■■■□□ 2,84
Rc3h1Q4VGL6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32,82■■■□□ 2,84
Rc3h1Q4VGL6 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32,8■■■□□ 2,84
Rc3h1Q4VGL6 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC32,79■■■□□ 2,84
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms