RNA–Protein interactions for RNA: YJL140W

RPB4, Transcript of RNA polymerase II subunit B32, yeast

Gene RPB4, Length 666 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPB4	YJL140W	MMT1	Q03218	510 aa		4.8	□□□□□ -1.64
RPB4	YJL140W	EFR3	Q03653	782 aa	Known RBP	4.8	□□□□□ -1.64
RPB4	YJL140W	YKU80	Q04437	629 aa		4.8	□□□□□ -1.64
RPB4	YJL140W	GPI11	Q06636	219 aa		4.8	□□□□□ -1.64
RPB4	YJL140W	DTD1	Q07648	150 aa	Known RBP	4.8	□□□□□ -1.64
RPB4	YJL140W	ATG29	Q12092	213 aa		4.8	□□□□□ -1.64
RPB4	YJL140W	RPL7B	Q12213	244 aa	Known RBP	4.8	□□□□□ -1.64
RPB4	YJL140W	YOR114W	Q12219	294 aa		4.8	□□□□□ -1.64
RPB4	YJL140W	RPN5	Q12250	445 aa	Known RBP	4.8	□□□□□ -1.64
RPB4	YJL140W	YLR111W	Q12528	110 aa		4.8	□□□□□ -1.64
RPB4	YJL140W	RAD7	P06779	565 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	RHO1	P06780	209 aa	Known RBP	4.79	□□□□□ -1.64
RPB4	YJL140W	HOM3	P10869	527 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	MDM10	P18409	493 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	TRX3	P25372	127 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	NTG1	P31378	399 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	GAB1	P41733	394 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	PMT6	P42934	759 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	AIM22	P47051	409 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	IBA57	P47158	497 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	BIO3	P50277	480 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	YNL140C	P53910	189 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	SPR6	Q01684	191 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	NGL2	Q03264	515 aa	Known RBP	4.79	□□□□□ -1.64
RPB4	YJL140W	PEX12	Q04370	399 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	YMR034C	Q05131	434 aa	Predicted RBP	4.79	□□□□□ -1.64
RPB4	YJL140W	FMP45	Q07651	309 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	TEN1	Q07921	160 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	LOT6	Q07923	191 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	YOL131W	Q08270	108 aa		4.79	□□□□□ -1.64
RPB4	YJL140W	PFK27	Q12471	397 aa	Predicted RBP	4.79	□□□□□ -1.64
RPB4	YJL140W	YPT1	P01123	206 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	ADE5,7	P07244	802 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	RPS21A	P0C0V8	87 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	CDC26	P14724	124 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	CMK2	P22517	447 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	URE2	P23202	354 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	CTR86	P25355	563 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	CPR3	P25719	182 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	UBC8	P28263	218 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	ARP2	P32381	391 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	SRB5	P32585	307 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	YBR241C	P38142	488 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	VRG4	P40107	337 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	NDE1	P40215	560 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	SED5	Q01590	340 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	SPO19	Q03029	223 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	SVL3	Q03088	825 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	MDM30	Q05930	598 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	ARR1	Q06596	294 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	SWA2	Q06677	668 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	YLL007C	Q07799	665 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	IZH3	Q07959	543 aa		4.78	□□□□□ -1.64
RPB4	YJL140W	WTM1	Q12363	437 aa	Known RBP	4.78	□□□□□ -1.64
RPB4	YJL140W	CBP2	P03874	630 aa	Predicted RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	STE12	P13574	688 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	FBA1	P14540	359 aa	Known RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	PRP2	P20095	876 aa	Predicted RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	MRPS28	P21771	286 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	CYS4	P32582	507 aa	Known RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	SPO23	P33757	523 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	SPC34	P36131	295 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	YBR071W	P38243	211 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	STP2	P38704	541 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	MNL1	P38888	796 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	GGC1	P38988	300 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	MIT1	P40002	666 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	SEC24	P40482	926 aa	Known RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	YRB2	P40517	327 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	AGP3	P43548	558 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	YJL043W	P47053	257 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	VMA10	P48836	114 aa	Known RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	YGR250C	P53316	781 aa	Known RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	DSL1	P53847	754 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	IRC15	Q02733	499 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	YDR179W-A	Q03983	463 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	YMR226C	Q05016	267 aa	Known RBP	4.77	□□□□□ -1.65
RPB4	YJL140W	GET4	Q12125	312 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	Q0010	Q9ZZX9	128 aa		4.77	□□□□□ -1.65
RPB4	YJL140W	COR1	P07256	457 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	SLM5	P25345	492 aa	Known RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	POL4	P25615	582 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	NAM9	P27929	486 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	SAC1	P32368	623 aa	Known RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	CAT2	P32796	670 aa	Known RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	TIF3	P34167	436 aa	Known RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	VPS21	P36017	210 aa	Known RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	RIB1	P38066	345 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	RCK1	P38622	512 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	RBG1	P39729	369 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	RIC1	P40395	1056 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	YJR096W	P47137	282 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	JHD2	P47156	728 aa	Predicted RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	YNR068C	P53754	272 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	MSC1	Q03104	513 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	YMR099C	Q03161	297 aa	Known RBP	4.76	□□□□□ -1.65
RPB4	YJL140W	SMP3	Q04174	516 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	VPS74	Q06385	345 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	NMD4	Q12129	218 aa		4.76	□□□□□ -1.65
RPB4	YJL140W	BRR1	Q99177	341 aa	Predicted RBP	4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 37.8 ms