RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W YDR109CQ04585 715 aa3.1□□□□□ -1.91
USE1YGL098W YDR124WQ04608 324 aa3.1□□□□□ -1.91
USE1YGL098W YLR413WQ06689 675 aa3.1□□□□□ -1.91
USE1YGL098W CYK3Q07533 885 aa3.1□□□□□ -1.91
USE1YGL098W RRG7Q08774 242 aaPredicted RBP3.1□□□□□ -1.91
USE1YGL098W HOS1Q12214 470 aa3.1□□□□□ -1.91
USE1YGL098W RRP42Q12277 265 aaPredicted RBP3.1□□□□□ -1.91
USE1YGL098W RKM5Q12367 367 aa3.1□□□□□ -1.91
USE1YGL098W ERG27Q12452 347 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W AGC1Q12482 902 aa3.1□□□□□ -1.91
USE1YGL098W RMD5Q12508 421 aa3.1□□□□□ -1.91
USE1YGL098W VMA9Q3E7B6 73 aa3.1□□□□□ -1.91
USE1YGL098W MDM12Q92328 271 aa3.1□□□□□ -1.91
USE1YGL098W PNO1Q99216 274 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W MEX67Q99257 599 aaKnown RBP3.1□□□□□ -1.91
USE1YGL098W YMR084WA2P2R3 262 aa3.09□□□□□ -1.91
USE1YGL098W ILV1P00927 576 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W DFR1P07807 211 aaKnown RBP RIP-Chip data3.09□□□□□ -1.91not detected
USE1YGL098W ATP5P09457 212 aa3.09□□□□□ -1.91
USE1YGL098W URA6P15700 204 aa3.09□□□□□ -1.91
USE1YGL098W ERD1P16151 362 aa3.09□□□□□ -1.91
USE1YGL098W RPL8AP17076 256 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W COX11P19516 300 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W ZRC1P20107 442 aa3.09□□□□□ -1.91
USE1YGL098W CKS1P20486 150 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W UTR1P21373 530 aa3.09□□□□□ -1.91
USE1YGL098W RFA1P22336 621 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W PRE9P23638 258 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W STE50P25344 346 aa3.09□□□□□ -1.91
USE1YGL098W RHB1P25378 209 aa3.09□□□□□ -1.91
USE1YGL098W SGF29P25554 259 aa3.09□□□□□ -1.91
USE1YGL098W TAH1P25638 111 aaPredicted RBP3.09□□□□□ -1.91
USE1YGL098W AHC2P25649 128 aa3.09□□□□□ -1.91
USE1YGL098W HOM6P31116 359 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W DAL3P32459 195 aa3.09□□□□□ -1.91
USE1YGL098W RPD3P32561 433 aa3.09□□□□□ -1.91
USE1YGL098W CDC5P32562 705 aa3.09□□□□□ -1.91
USE1YGL098W PAH1P32567 862 aa3.09□□□□□ -1.91
USE1YGL098W COX13P32799 129 aa3.09□□□□□ -1.91
USE1YGL098W MRP4P32902 394 aa3.09□□□□□ -1.91
USE1YGL098W MTC2P34246 357 aa3.09□□□□□ -1.91
USE1YGL098W ASK1P35734 292 aa3.09□□□□□ -1.91
USE1YGL098W COS9P36034 407 aa3.09□□□□□ -1.91
USE1YGL098W YKR051WP36142 418 aa3.09□□□□□ -1.91
USE1YGL098W MRPL4P36517 319 aa3.09□□□□□ -1.91
USE1YGL098W APE3P37302 537 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W ALP1P38971 573 aa3.09□□□□□ -1.91
USE1YGL098W YEL025CP39991 1188 aa3.09□□□□□ -1.91
USE1YGL098W RFC4P40339 323 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W LAS21P40367 830 aa3.09□□□□□ -1.91
USE1YGL098W BMT5P40493 336 aa3.09□□□□□ -1.91
USE1YGL098W PRM2P40534 656 aa3.09□□□□□ -1.91
USE1YGL098W YJL218WP40892 196 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W ARF3P40994 183 aaRIP-Chip data3.09□□□□□ -1.91not detected
USE1YGL098W RPL10P41805 221 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W GDS1P41913 522 aa3.09□□□□□ -1.91
USE1YGL098W PFA3P42836 336 aa3.09□□□□□ -1.91
USE1YGL098W PRM10P42946 383 aa3.09□□□□□ -1.91
USE1YGL098W YFL040WP43562 540 aa3.09□□□□□ -1.91
USE1YGL098W CAK1P43568 368 aaPredicted RBP3.09□□□□□ -1.91
USE1YGL098W GAT1P43574 510 aa3.09□□□□□ -1.91
USE1YGL098W YAE1P47118 141 aaPredicted RBP3.09□□□□□ -1.91
USE1YGL098W GCV1P48015 400 aa3.09□□□□□ -1.91
USE1YGL098W YDL183CP48569 320 aa3.09□□□□□ -1.91
USE1YGL098W ASN2P49090 572 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W ALT2P52892 507 aa3.09□□□□□ -1.91
USE1YGL098W ROG1P53118 685 aa3.09□□□□□ -1.91
USE1YGL098W GPG1P53130 126 aa3.09□□□□□ -1.91
USE1YGL098W COQ6P53318 479 aa3.09□□□□□ -1.91
USE1YGL098W SAE3P89114 91 aa3.09□□□□□ -1.91
USE1YGL098W PRP38Q00723 242 aaPredicted RBP3.09□□□□□ -1.91
USE1YGL098W YDC1Q02896 317 aa3.09□□□□□ -1.91
USE1YGL098W RNY1Q02933 434 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W OST6Q03723 332 aa3.09□□□□□ -1.91
USE1YGL098W RKM2Q03942 479 aa3.09□□□□□ -1.91
USE1YGL098W DOT1Q04089 582 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W AIM33Q04516 312 aa3.09□□□□□ -1.91
USE1YGL098W RIF2Q06208 395 aa3.09□□□□□ -1.91
USE1YGL098W FRQ1Q06389 190 aa3.09□□□□□ -1.91
USE1YGL098W ECM30Q06673 1274 aa3.09□□□□□ -1.91
USE1YGL098W SSK1Q07084 712 aa3.09□□□□□ -1.91
USE1YGL098W FDH1Q08911 376 aa3.09□□□□□ -1.91
USE1YGL098W YPL257WQ08974 193 aa3.09□□□□□ -1.91
USE1YGL098W YPL260WQ08977 551 aa3.09□□□□□ -1.91
USE1YGL098W NUS1Q12063 375 aa3.09□□□□□ -1.91
USE1YGL098W YLL056CQ12177 298 aa3.09□□□□□ -1.91
USE1YGL098W LPX1Q12405 387 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W GIS3Q12418 502 aa3.09□□□□□ -1.91
USE1YGL098W TIF6Q12522 245 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W TMA7Q3E764 64 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W YDL085C-AQ3E7B7 68 aaKnown RBP3.09□□□□□ -1.91
USE1YGL098W YPR014CQ6B0W2 109 aa3.09□□□□□ -1.91
USE1YGL098W HBN1Q96VH4 193 aa3.09□□□□□ -1.91
USE1YGL098W CET1O13297 549 aaPredicted RBP3.08□□□□□ -1.92
USE1YGL098W RPS9AO13516 197 aaKnown RBP3.08□□□□□ -1.92
USE1YGL098W TIM9O74700 87 aa3.08□□□□□ -1.92
USE1YGL098W SUC2P00724 532 aa3.08□□□□□ -1.92
USE1YGL098W ADE4P04046 510 aaKnown RBP3.08□□□□□ -1.92
USE1YGL098W RPC40P07703 335 aaKnown RBP3.08□□□□□ -1.92
USE1YGL098W TY1A-LR4P0C2I8 440 aaKnown RBP3.08□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms