RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	HAT2	P39984	401 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	MET18	P40469	1032 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	UTP25	P40498	721 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	SEC27	P41811	889 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	SNO3	P43544	222 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	LYS20	P48570	428 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	BOL2	P53082	120 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	CWC22	P53333	577 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	IDP3	P53982	420 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	MSC1	Q03104	513 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	URH1	Q04179	340 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	BUD22	Q04347	519 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	ADE13	Q05911	482 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	BOP2	Q06150	570 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	RRP40	Q08285	240 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	YPL245W	Q12179	454 aa	Known RBP	3.9	□□□□□ -1.79
UBC8	YEL012W	YMR030W-A	Q3E760	96 aa		3.9	□□□□□ -1.79
UBC8	YEL012W	MF(ALPHA)1	P01149	165 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	LEU4	P06208	619 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	YML002W	P0CF17	737 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	RAP1	P11938	827 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	MRP13	P12686	339 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	MSS116	P15424	664 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	CKI1	P20485	582 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	URE2	P23202	354 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	COQ3	P27680	312 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	SSE2	P32590	693 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	SUI1	P32911	108 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	TSC10	P38342	320 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	UTP9	P38882	575 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	ATF1	P40353	525 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	APQ12	P40532	138 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	PAC11	P40960	533 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	PMT4	P46971	762 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	HOC1	P47124	396 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	STE24	P47154	453 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	MDM34	P53083	459 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	HOS2	P53096	452 aa	Predicted RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	CLD1	P53264	445 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	BUD32	P53323	261 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	ALF1	P53904	254 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	BOP3	P53958	396 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	PRP38	Q00723	242 aa	Predicted RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	UTP6	Q02354	440 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	RNY1	Q02933	434 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	ECI1	Q05871	280 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	HER1	Q12276	1246 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	BLM10	P43583	2143 aa		3.89	□□□□□ -1.79
UBC8	YEL012W	URA2	P07259	2214 aa	Known RBP	3.89	□□□□□ -1.79
UBC8	YEL012W	STE3	P06783	470 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.88	□□□□□ -1.79	not detected
UBC8	YEL012W	SSC1	P0CS90	654 aa	Known RBP	3.88	□□□□□ -1.79
UBC8	YEL012W	GLK1	P17709	500 aa	Known RBP	3.88	□□□□□ -1.79
UBC8	YEL012W	NUP1	P20676	1076 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	CNA1	P23287	553 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	TRX3	P25372	127 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	STP22	P25604	385 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	KRE6	P32486	720 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	HXT9	P40885	567 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	ARF3	P40994	183 aa	RIP-Chip data	3.88	□□□□□ -1.79	not detected
UBC8	YEL012W	YRB1	P41920	201 aa	Known RBP	3.88	□□□□□ -1.79
UBC8	YEL012W	YGR066C	P53242	292 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	CAC2	Q04199	468 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	DPB4	Q04603	196 aa	Known RBP	3.88	□□□□□ -1.79
UBC8	YEL012W	BCH1	Q05029	724 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	COQ11	Q05892	277 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	RIF2	Q06208	395 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	VAC14	Q06708	880 aa		3.88	□□□□□ -1.79
UBC8	YEL012W	FMP40	Q08968	688 aa	Predicted RBP	3.88	□□□□□ -1.79
UBC8	YEL012W	COR1	P07256	457 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	PHO2	P07269	559 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	ELO2	P25358	347 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	IME2	P32581	645 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	ATO2	P32907	282 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YBR144C	P34215	104 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	CUE2	P36075	443 aa	Known RBP	3.87	□□□□□ -1.79
UBC8	YEL012W	ANS1	P38832	159 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YDR089W	P38966	869 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	IMD4	P50094	524 aa	Known RBP	3.87	□□□□□ -1.79
UBC8	YEL012W	YPL068C	Q02749	293 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	RIM13	Q03792	727 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	CSN9	Q03981	162 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	SWF1	Q04629	336 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	ORM2	Q06144	216 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YLR352W	Q06479	807 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	GRC3	Q07845	632 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YOR097C	Q12274	175 aa	Predicted RBP	3.87	□□□□□ -1.79
UBC8	YEL012W	RRP42	Q12277	265 aa	Predicted RBP	3.87	□□□□□ -1.79
UBC8	YEL012W	RTN2	Q12443	393 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	RRI1	Q12468	440 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YPR064W	Q12492	139 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YOL159C-A	Q3E769	90 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YNL162W-A	Q3E7A8	72 aa		3.87	□□□□□ -1.79
UBC8	YEL012W	YER190C-B	P0CX94	160 aa		3.86	□□□□□ -1.79
UBC8	YEL012W	YEL077W-A	P0CX95	160 aa		3.86	□□□□□ -1.79
UBC8	YEL012W	YGR296C-B	P0CX96	160 aa		3.86	□□□□□ -1.79
UBC8	YEL012W	YPL283W-B	P0CX97	160 aa		3.86	□□□□□ -1.79
UBC8	YEL012W	YPR204C-A	P0CX98	160 aa		3.86	□□□□□ -1.79
UBC8	YEL012W	PEP5	P12868	1029 aa		3.86	□□□□□ -1.79
UBC8	YEL012W	MTR2	P34232	184 aa	Known RBP	3.86	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 176.1 ms