RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 DDX39AO00148 427 aaKnown RBP12.7□□□□□ -0.38
SMAD4-211ENST00000590499 MSH4O15457 936 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 NBNO60934 754 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 PARNO95453 639 aaKnown RBP12.7□□□□□ -0.38
SMAD4-211ENST00000590499 GNAT1P11488 350 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 MARK3P27448 753 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 Q4G0T1 1027 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 MARCH8Q5T0T0 291 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 MOXD1Q6UVY6 613 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 PLPPR4Q7Z2D5 763 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 KRT25Q7Z3Z0 450 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 DEFB128Q7Z7B8 93 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 DEFB123Q8N688 67 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 WASF1Q92558 559 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 GLG1Q92896 1179 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 HPS1Q92902 700 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 TNFRSF25Q93038 417 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 UIMC1Q96RL1 719 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 TBC1D22BQ9NU19 505 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 MICAL3Q7RTP6 2002 aa12.7□□□□□ -0.38
SMAD4-211ENST00000590499 TRANK1O15050 2925 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 GRXCR1A8MXD5 290 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 CAND2O75155 1236 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 TDP2O95551 362 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 XBP1P17861 261 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 STAT5BP51692 787 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 PPFIA1Q13136 1202 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 PLCB4Q15147 1175 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 NONOQ15233 471 aaKnown RBP eCLIP12.69□□□□□ -0.38
SMAD4-211ENST00000590499 GRIK4Q16099 956 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 TCTN1Q2MV58 587 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 ZNF746Q6NUN9 644 aaPredicted RBP12.69□□□□□ -0.38
SMAD4-211ENST00000590499 RPAINQ86UA6 219 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 CCDC60Q8IWA6 550 aaPredicted RBP12.69□□□□□ -0.38
SMAD4-211ENST00000590499 PARP9Q8IXQ6 854 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 SLC5A5Q92911 643 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 MTIF3Q9H2K0 278 aaKnown RBP12.69□□□□□ -0.38
SMAD4-211ENST00000590499 AZI2Q9H6S1 392 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 MTMR10Q9NXD2 777 aa12.69□□□□□ -0.38
SMAD4-211ENST00000590499 EVPLQ92817 2033 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 RBAK-RBAKDNI3L0D1 243 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 LORP23490 312 aaPredicted RBP12.68□□□□□ -0.38
SMAD4-211ENST00000590499 THPOP40225 353 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 SLC26A2P50443 739 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 KRT76Q01546 638 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 RABEP1Q15276 862 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 INF2Q27J81 1249 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 EARS2Q5JPH6 523 aaKnown RBP12.68□□□□□ -0.38
SMAD4-211ENST00000590499 FAM26DQ5JW98 314 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 B3GNT9Q6UX72 402 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 RUFY4Q6ZNE9 571 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 SMAP1Q8IYB5 467 aaPredicted RBP12.68□□□□□ -0.38
SMAD4-211ENST00000590499 ETNPPLQ8TBG4 499 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 RIT2Q99578 217 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 PBX4Q9BYU1 374 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 TTYH1Q9H313 450 aaPredicted RBP12.68□□□□□ -0.38
SMAD4-211ENST00000590499 TUBE1Q9UJT0 475 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 PCDHGC3Q9UN70 934 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 LOXHD1Q8IVV2 1947 aa12.68□□□□□ -0.38
SMAD4-211ENST00000590499 IGSF9BQ9UPX0 1349 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 TMEM265A0A087WTH1 108 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 CCDC194A0A1B0GVG4 234 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 RSPH10B2B2RC85 870 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 SLC37A4O43826 429 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 PSMD10O75832 226 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 BAIAP3O94812 1187 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 RSPH10BP0C881 870 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 ACTN1P12814 892 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 INSRRP14616 1297 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 ATP4AP20648 1035 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 NR5A1Q13285 461 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 MIS18BP1Q6P0N0 1132 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 TAF2Q6P1X5 1199 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 CNKSR3Q6P9H4 555 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 NEK8Q86SG6 692 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 CCDC83Q8IWF9 413 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 ATP8B4Q8TF62 1192 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 GJA10Q969M2 543 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 ZSCAN31Q96LW9 406 aaPredicted RBP12.67□□□□□ -0.38
SMAD4-211ENST00000590499 GUCD1Q96NT3 240 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 LLPHQ9BRT6 129 aaKnown RBP12.67□□□□□ -0.38
SMAD4-211ENST00000590499 OSBPL7Q9BZF2 842 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 FTOQ9C0B1 505 aaKnown RBP eCLIP12.67□□□□□ -0.38
SMAD4-211ENST00000590499 SH2B1Q9NRF2 756 aaPredicted RBP12.67□□□□□ -0.38
SMAD4-211ENST00000590499 MAFBQ9Y5Q3 323 aaPredicted RBP12.67□□□□□ -0.38
SMAD4-211ENST00000590499 SLC4A7Q9Y6M7 1214 aa12.67□□□□□ -0.38
SMAD4-211ENST00000590499 RRN3P2A6NIE6 340 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 ZBTB42B2RXF5 422 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 BACH1O14867 736 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 MMP1P03956 469 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 NDUFV2P19404 249 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 KRT2P35908 639 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 MGAT3Q09327 533 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 LRCH2Q5VUJ6 765 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 FAM160B1Q5W0V3 765 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 KRT40Q6A162 431 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 PPP4R3AQ6IN85 833 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 SWSAP1Q6NVH7 229 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 PIK3AP1Q6ZUJ8 805 aa12.66□□□□□ -0.38
SMAD4-211ENST00000590499 RETREG3Q86VR2 466 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms