RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 HOMER1Q86YM7 354 aa15.02■□□□□ -0
CCDC40-208ENST00000572270 TBC1D10CQ8IV04 446 aa15.02■□□□□ -0
CCDC40-208ENST00000572270 PI4K2BQ8TCG2 481 aa15.02■□□□□ -0
CCDC40-208ENST00000572270 HELLSQ9NRZ9 838 aa15.02■□□□□ -0
CCDC40-208ENST00000572270 SMIM35A0A1B0GVV1 85 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 GSTTP1A0A1W2PQM5 241 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 SRFP11831 508 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 LETM2Q2VYF4 491 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 PPM1JQ5JR12 505 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 LRRC55Q6ZSA7 311 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 SLC39A11Q8N1S5 342 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 MTMR8Q96EF0 704 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 TMEM169Q96HH4 297 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 CDHR1Q96JP9 859 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 CASD1Q96PB1 797 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 AZI2Q9H6S1 392 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 SH2B1Q9NRF2 756 aaPredicted RBP15.01□□□□□ -0.01
CCDC40-208ENST00000572270 DLGAP2Q9P1A6 1054 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 ST3GAL5Q9UNP4 418 aa15.01□□□□□ -0.01
CCDC40-208ENST00000572270 NOC2LQ9Y3T9 749 aaKnown RBP15.01□□□□□ -0.01
CCDC40-208ENST00000572270 C2orf16Q68DN1 1984 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 KLRF2D3W0D1 207 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 COL9A3Q14050 684 aaPredicted RBP15□□□□□ -0.01
CCDC40-208ENST00000572270 ZNF528Q3MIS6 628 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 PCNX4Q63HM2 1172 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 PPFIBP1Q86W92 1011 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 VPS52Q8N1B4 723 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 STAG2Q8N3U4 1231 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 TRAPPC12Q8WVT3 735 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 ATRIPQ8WXE1 791 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 ZSCAN10Q96SZ4 725 aaPredicted RBP15□□□□□ -0.01
CCDC40-208ENST00000572270 ARHGEF3Q9NR81 526 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 SMG5Q9UPR3 1016 aaKnown RBP15□□□□□ -0.01
CCDC40-208ENST00000572270 PCDHGA2Q9Y5H1 932 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 MIA3Q5JRA6 1907 aa15□□□□□ -0.01
CCDC40-208ENST00000572270 POTEMA6NI47 508 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 LAMTOR5O43504 91 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 KCNA2P16389 499 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 GBP2P32456 591 aaPredicted RBP14.99□□□□□ -0.01
CCDC40-208ENST00000572270 METAP2P50579 478 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC40-208ENST00000572270 FAM189BP81408 668 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 PLCB4Q15147 1175 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 POTEGQ6S5H5 508 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 ENAHQ8N8S7 591 aaPredicted RBP14.99□□□□□ -0.01
CCDC40-208ENST00000572270 PJA1Q8NG27 643 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 GPR152Q8TDT2 470 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 SLC22A17Q8WUG5 538 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 RSAD2Q8WXG1 361 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 NXPE3Q969Y0 559 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 GPRASP2Q96D09 838 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 ZBP1Q9H171 429 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 FBXO4Q9UKT5 387 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 FAM208BQ5VWN6 2430 aa14.99□□□□□ -0.01
CCDC40-208ENST00000572270 ATP9AO75110 1047 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 ALDH7A1P49419 539 aaKnown RBP14.98□□□□□ -0.01
CCDC40-208ENST00000572270 PTPN14Q15678 1187 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 MCMDC2Q4G0Z9 681 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 MTHFD1LQ6UB35 978 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 C15orf39Q6ZRI6 1047 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 SMARCC2Q8TAQ2 1214 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 AUTS2Q8WXX7 1259 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 STAMQ92783 540 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 CUL5Q93034 780 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 SPATA6Q9NWH7 488 aaPredicted RBP14.98□□□□□ -0.01
CCDC40-208ENST00000572270 GMEB2Q9UKD1 530 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 IRAK3Q9Y616 596 aa14.98□□□□□ -0.01
CCDC40-208ENST00000572270 CACNA1IQ9P0X4 2223 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 LAMA4Q16363 1823 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 ZNF213O14771 459 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 CTSAP10619 480 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 KCNA4P22459 653 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 DCLRE1AQ6PJP8 1040 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 MAML2Q8IZL2 1156 aaPredicted RBP14.97□□□□□ -0.01
CCDC40-208ENST00000572270 SLC44A3Q8N4M1 653 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 FEZF2Q8TBJ5 459 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 TMEM40Q8WWA1 233 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 PIGSQ96S52 555 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 MRPL9Q9BYD2 267 aaKnown RBP14.97□□□□□ -0.01
CCDC40-208ENST00000572270 BCO2Q9BYV7 579 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 FOXQ1Q9C009 403 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 PKD2L1Q9P0L9 805 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 ANGPTL2Q9UKU9 493 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 GPR179Q6PRD1 2367 aa14.97□□□□□ -0.01
CCDC40-208ENST00000572270 PATJQ8NI35 1801 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 A0A0D9SFI3 127 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 B4E1Z4 1266 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 NT5C1B-RDH14C9J2C7 533 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 POLGP54098 1239 aaPredicted RBP14.96□□□□□ -0.01
CCDC40-208ENST00000572270 CSTF1Q05048 431 aaKnown RBP14.96□□□□□ -0.01
CCDC40-208ENST00000572270 IFIT1BQ5T764 474 aaKnown RBP14.96□□□□□ -0.01
CCDC40-208ENST00000572270 FAM228AQ86W67 206 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 RNF169Q8NCN4 708 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 NETO1Q8TDF5 533 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 COL26A1Q96A83 441 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 EVI5LQ96CN4 794 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 SHDQ96IW2 340 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 FAM227BQ96M60 508 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 UBAC1Q9BSL1 405 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 EPC1Q9H2F5 836 aa14.96□□□□□ -0.01
CCDC40-208ENST00000572270 DCTPP1Q9H773 170 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms