RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SIGLEC14Q08ET2 396 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 TRDNQ13061 729 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 LPIN1Q14693 890 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 BRICD5Q6PL45 260 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 NYAP1Q6ZVC0 841 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 FCHSD1Q86WN1 690 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 KLHL23Q8NBE8 558 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 LMBR1Q8WVP7 490 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 RUFY2Q8WXA3 655 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 APBB2Q92870 758 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 INPP4AQ96PE3 977 aaPredicted RBP11.53□□□□□ -0.56
SCFD1-220ENST00000556486 PRRX2Q99811 253 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 MTA3Q9BTC8 594 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 CDH22Q9UJ99 828 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 CACNA1AO00555 2505 aa11.53□□□□□ -0.56
SCFD1-220ENST00000556486 KAT6AQ92794 2004 aa11.52□□□□□ -0.56
SCFD1-220ENST00000556486 SOWAHDA6NJG2 315 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 GCOM1H8Y6P7 765 aaPredicted RBP11.52□□□□□ -0.57
SCFD1-220ENST00000556486 ENPP3O14638 875 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 LZTS3O60299 673 aaPredicted RBP11.52□□□□□ -0.57
SCFD1-220ENST00000556486 CAND2O75155 1236 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 POLR2MP0CAP2 368 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 CHMLP26374 656 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 SMARCA1P28370 1054 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 CCND2P30279 289 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 PTPRNQ16849 979 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 CYFIP1Q7L576 1253 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 ZBTB33Q86T24 672 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 EFHBQ8N7U6 833 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 VN1R2Q8NFZ6 395 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 SPPL3Q8TCT6 385 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 LINC01599Q8WXQ3 324 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 ZNF592Q92610 1267 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 PIGSQ96S52 555 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 SMOC2Q9H3U7 446 aa11.52□□□□□ -0.57
SCFD1-220ENST00000556486 ERICH2A1L162 156 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 SPATA31C2B4DYI2 1134 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 IFIT3O14879 490 aaKnown RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 SGSM2O43147 1006 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 JUNDP17535 347 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 MCCD1P59942 119 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 MRPS9P82933 396 aaKnown RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 PTH1RQ03431 593 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 COASYQ13057 564 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 CBX2Q14781 532 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 SART3Q15020 963 aaKnown RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 GNPTABQ3T906 1256 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 XRRA1Q6P2D8 792 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 METTL7BQ6UX53 244 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 ANKMY2Q8IV38 441 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 PHTF2Q8N3S3 785 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 NCOA7Q8NI08 942 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 MICAL1Q8TDZ2 1067 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 POF1BQ8WVV4 589 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 ZNF689Q96CS4 500 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 SENP7Q9BQF6 1050 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 PRR14Q9BWN1 585 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 PHF7Q9BWX1 381 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 SPZ1Q9BXG8 430 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 USP26Q9BXU7 913 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 RTEL1Q9NZ71 1219 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 RWDD3Q9Y3V2 267 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 GPSM3Q9Y4H4 160 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 TTC3P53804 2025 aa11.51□□□□□ -0.57
SCFD1-220ENST00000556486 BAZ2BQ9UIF8 2168 aaKnown RBP11.51□□□□□ -0.57
SCFD1-220ENST00000556486 CACNA1HO95180 2353 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 DMXL1Q9Y485 3027 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 PRR23AA6NEV1 266 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 E7EWF7 191 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 DGKIO75912 1065 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 MARK3P27448 753 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 CD52P31358 61 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 CTHP32929 405 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 ADAM17P78536 824 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 TMEM62Q0P6H9 643 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 NEDD9Q14511 834 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 WTAPQ15007 396 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 LLGL2Q6P1M3 1020 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 FRMD5Q7Z6J6 570 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 RALYLQ86SE5 291 aaKnown RBP11.5□□□□□ -0.57
SCFD1-220ENST00000556486 HOMER1Q86YM7 354 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 PLPP7Q8NBV4 271 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 IGDCC4Q8TDY8 1250 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 MAP4K1Q92918 833 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 GPR20Q99678 358 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 TLE6Q9H808 572 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 SENP2Q9HC62 589 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 TAF6LQ9Y6J9 622 aa11.5□□□□□ -0.57
SCFD1-220ENST00000556486 FIBPO43427 364 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 DDAH1O94760 285 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 ARP10275 920 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 SERPINB4P48594 390 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 ANTXR2P58335 489 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 IGBP1P78318 339 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PTK2Q05397 1052 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 APOBRQ0VD83 1088 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PKN1Q16512 942 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PTPN21Q16825 1174 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 FAM26DQ5JW98 314 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PCNX4Q63HM2 1172 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms