RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 PTPN21Q16825 1174 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 TTC39BQ5VTQ0 682 aaPredicted RBP4.85□□□□□ -1.63
SNHG1-220ENST00000544550 FOXR1Q6PIV2 292 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 C16orf86Q6ZW13 317 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 SV2AQ7L0J3 742 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 EEPD1Q7L9B9 569 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 KRT25Q7Z3Z0 450 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 GALNT12Q8IXK2 581 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 UBALD2Q8IYN6 164 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 OR13H1Q8NG92 308 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 MORC4Q8TE76 937 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 SDR42E1Q8WUS8 393 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 CCDC74AQ96AQ1 378 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 DYNLL2Q96FJ2 89 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 RIPOR3Q96MK2 946 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 TRERF1Q96PN7 1200 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 MEIS3Q99687 375 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 KATNAL1Q9BW62 490 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 PHF7Q9BWX1 381 aaPredicted RBP4.85□□□□□ -1.63
SNHG1-220ENST00000544550 BCL11AQ9H165 835 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 SEMA4AQ9H3S1 761 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 A1CFQ9NQ94 594 aaKnown RBP4.85□□□□□ -1.63
SNHG1-220ENST00000544550 PDGFCQ9NRA1 345 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 HOMER2Q9NSB8 354 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 RNF146Q9NTX7 359 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 NYAP2Q9P242 653 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.85□□□□□ -1.63
SNHG1-220ENST00000544550 PRRC2BQ5JSZ5 2229 aaKnown RBP4.85□□□□□ -1.63
SNHG1-220ENST00000544550 CACNA1AO00555 2505 aa4.85□□□□□ -1.63
SNHG1-220ENST00000544550 NCOR1O75376 2440 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 COL4A6Q14031 1691 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 CDC14CA4D256 554 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 B4DLN1 442 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 TBX10O75333 385 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 RECKO95980 971 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 GNAI2P04899 355 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 HOXD8P13378 290 aaPredicted RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 ATF7P17544 494 aaPredicted RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 NFKB1P19838 968 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 SDHBP21912 280 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 SOX18P35713 384 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 STAT2P52630 851 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 MRPL12P52815 198 aaKnown RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 CTBSQ01459 385 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 DLX2Q07687 328 aaPredicted RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 PSMD2Q13200 908 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 ADAM15Q13444 863 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 GPNMBQ14956 572 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.84□□□□□ -1.632e-12■■□□□ 11.6
SNHG1-220ENST00000544550 SLC9C2Q5TAH2 1124 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 C12orf60Q5U649 245 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 FRMD5Q7Z6J6 570 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 FAM160B2Q86V87 743 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 LRRC47Q8N1G4 583 aaKnown RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 FIBCD1Q8N539 461 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 BEND7Q8N7W2 519 aaPredicted RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 SMRP1Q8NCR6 262 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 GMCL1P1Q8NEA9 526 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 SCFD2Q8WU76 684 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 CHURC1Q8WUH1 139 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 TOP1MTQ969P6 601 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 RMDN1Q96DB5 314 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 MSLNLQ96KJ4 702 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 NUP88Q99567 741 aaPredicted RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 PLVAPQ9BX97 442 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 ZNF287Q9HBT7 754 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 TLR7Q9NYK1 1049 aaKnown RBP4.84□□□□□ -1.63
SNHG1-220ENST00000544550 SALL4Q9UJQ4 1053 aa4.84□□□□□ -1.63
SNHG1-220ENST00000544550 C2CD2LO14523 706 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 GIPC1O14908 333 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 SORBS3O60504 671 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 KIF4AO95239 1232 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 LMNAP02545 664 aaKnown RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 MMP1P03956 469 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 CT47B1P0C2W7 299 aaPredicted RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 SRGAP2BP0DMP2 458 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 CYP2D6P10635 497 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 BMP3P12645 472 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 ALAS1P13196 640 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 PDE6AP16499 860 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 CASTP20810 708 aaKnown RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 CES1P23141 567 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 PTGS1P23219 599 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 CTNNB1P35222 781 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 BMPR1AP36894 532 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 RRP1P56182 461 aaKnown RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 CHMP4BP1P59074 171 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 PDE4BQ07343 736 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 IKQ13123 557 aaPredicted RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 ST3GAL2Q16842 350 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 NAALADL2Q58DX5 795 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 GDF6Q6KF10 455 aaPredicted RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 EFHBQ8N7U6 833 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 C7orf31Q8N865 590 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 EPS8L3Q8TE67 593 aaKnown RBP4.83□□□□□ -1.64
SNHG1-220ENST00000544550 SEPT8Q92599 483 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 APBB2Q92870 758 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 BHMTQ93088 406 aa4.83□□□□□ -1.64
SNHG1-220ENST00000544550 IL17RAQ96F46 866 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms