RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 TNPO2O14787 897 aaKnown RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 MOCS3O95396 460 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 MSH2P43246 934 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 GPC3P51654 580 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 HSPH1Q92598 858 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 C2orf40Q9H1Z8 148 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 CDC23Q9UJX2 597 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ZNF521Q96K83 1311 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 SLC16A4O15374 487 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ZBED1O96006 694 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 RFC1P35251 1148 aaPredicted RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 CASP2P42575 452 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 KPNA2P52292 529 aaKnown RBP14.12□□□□□ -0.15
PTPRF-215ENST00000496447 NUDCD1Q96RS6 583 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ELP3Q9H9T3 547 aa14.12□□□□□ -0.15
PTPRF-215ENST00000496447 ASB14A6NK59 587 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 RECQLP46063 649 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 PLTPP55058 493 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 STX1BP61266 288 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 R3HDM1Q15032 1099 aaKnown RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 QRICH1Q2TAL8 776 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 RASIP1Q5U651 963 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 ADGRF4Q8IZF3 695 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 RAET1EQ8TD07 263 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 SAAL1Q96ER3 474 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 FAM84BQ96KN1 310 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 ABCF3Q9NUQ8 709 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 KCNH4Q9UQ05 1017 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 HSPA6P17066 643 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 HMGCS2P54868 508 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 TMEM260Q9NX78 707 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 STK36Q9NRP7 1315 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 P4HBP07237 508 aaKnown RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 CLTAP09496 248 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 QARSP47897 775 aaKnown RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 KRT33BQ14525 404 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 TCP11X2Q5H9J9 407 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 BZW1Q7L1Q6 419 aaKnown RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 GBP7Q8N8V2 638 aaPredicted RBP14.11□□□□□ -0.15
PTPRF-215ENST00000496447 XXYLT1Q8NBI6 393 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 PMLP29590 882 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 SOX5P35711 763 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 VPS72Q15906 364 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 PBKQ96KB5 322 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 FAM213AQ9BRX8 229 aa14.11□□□□□ -0.15
PTPRF-215ENST00000496447 IL9RQ01113 521 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 RAD54LQ92698 747 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 GCOM2Q9BZD3 368 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-215ENST00000496447 DONSONQ9NYP3 566 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 E9PMD0 336 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 IRX4P78413 519 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 GOLGA8QA0A0J9YX86 632 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 GOLGA8OA6NCC3 632 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 GOLGA8NF8WBI6 632 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 FAM8A1Q9UBU6 413 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 SUGT1Q9Y2Z0 365 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 PCDHA13Q9Y5I0 950 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 CD2BP2O95400 341 aaKnown RBP14.1□□□□□ -0.15
PTPRF-215ENST00000496447 PPARGP37231 505 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-215ENST00000496447 ACRBPQ8NEB7 543 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 SPATA31A6Q5VVP1 1343 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 E2F5Q15329 346 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 TRIP13Q15645 432 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-215ENST00000496447 CFAP36Q96G28 342 aa14.1□□□□□ -0.15
PTPRF-215ENST00000496447 POLR3FQ9H1D9 316 aaPredicted RBP14.1□□□□□ -0.15
PTPRF-215ENST00000496447 CNOT7Q9UIV1 285 aaKnown RBP14.1□□□□□ -0.15
PTPRF-215ENST00000496447 SART1O43290 800 aaKnown RBP14.09□□□□□ -0.15
PTPRF-215ENST00000496447 NR3C1P04150 777 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 SH3GL3Q99963 347 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 HAUS8Q9BT25 410 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 EPB41L5Q9HCM4 733 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 NRBP1Q9UHY1 535 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 SLC12A1Q13621 1099 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 PPP6R3Q5H9R7 873 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-215ENST00000496447 RESP18Q5W5W9 173 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 TBC1D16Q8TBP0 767 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 TTC25Q96NG3 672 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 PIDD1Q9HB75 910 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 DNAJC12Q9UKB3 198 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 PPME1Q9Y570 386 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 PSMC5P62195 406 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 IRX1P78414 480 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-215ENST00000496447 TMED2Q15363 201 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 SDCCAG3Q96C92 435 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 CRAMP1Q96RY5 1269 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 LY9Q9HBG7 655 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 CXCR5P32302 372 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 RCAN1P53805 252 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 IFT88Q13099 833 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 MTMR2Q13614 643 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 PCGF5Q86SE9 256 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 TRIM42Q8IWZ5 723 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 PDLIM2Q96JY6 352 aa14.09□□□□□ -0.15
PTPRF-215ENST00000496447 ZNF668Q96K58 619 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-215ENST00000496447 POTEB3A0JP26 581 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 SOWAHDA6NJG2 315 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 POTECB2RU33 542 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 IPO5O00410 1097 aaKnown RBP14.08□□□□□ -0.15
PTPRF-215ENST00000496447 GRIN3BO60391 1043 aa14.08□□□□□ -0.15
PTPRF-215ENST00000496447 AKR1B1P15121 316 aa14.08□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms