RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TRANK1O15050 2925 aa19.75■□□□□ 0.75
COL7A1-206ENST00000466591 SPTBN5Q9NRC6 3674 aaKnown RBP19.74■□□□□ 0.75
COL7A1-206ENST00000466591 MMP1P03956 469 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 NLRP11P59045 1033 aaKnown RBP19.74■□□□□ 0.75
COL7A1-206ENST00000466591 NAALADL2Q58DX5 795 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 ZNF710Q8N1W2 664 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 SLC5A5Q92911 643 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 TMX1Q9H3N1 280 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 UNC45AQ9H3U1 944 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 CDHR5Q9HBB8 845 aa19.74■□□□□ 0.75
COL7A1-206ENST00000466591 DDX25Q9UHL0 483 aaKnown RBP19.74■□□□□ 0.75
COL7A1-206ENST00000466591 MYH9P35579 1960 aaKnown RBP19.74■□□□□ 0.75
COL7A1-206ENST00000466591 ZBTB42B2RXF5 422 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 EIF5BO60841 1220 aaKnown RBP19.73■□□□□ 0.75
COL7A1-206ENST00000466591 TDP2O95551 362 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 IL9P15248 144 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 NDUFV1P49821 464 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 GATMP50440 423 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 DNM2P50570 870 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 ANKRD1Q15327 319 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 LETM2Q2VYF4 491 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 MTERF2Q49AM1 385 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 Q4G0T1 1027 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 FAM177A1Q8N128 213 aaPredicted RBP19.73■□□□□ 0.75
COL7A1-206ENST00000466591 RNF169Q8NCN4 708 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 RDM1Q8NG50 284 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.73■□□□□ 0.75
COL7A1-206ENST00000466591 TMEM40Q8WWA1 233 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 P2RX5Q93086 422 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 LENG9Q96B70 501 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 RC3H2Q9HBD1 1191 aaKnown RBP19.73■□□□□ 0.75
COL7A1-206ENST00000466591 BRMS1Q9HCU9 246 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 RGS18Q9NS28 235 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 PLAGL2Q9UPG8 496 aa19.73■□□□□ 0.75
COL7A1-206ENST00000466591 CLUL1Q15846 466 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 INF2Q27J81 1249 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 FAM228AQ86W67 206 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 THNSL1Q8IYQ7 743 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 GJD3Q8N144 294 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 KLHL23Q8NBE8 558 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 WASF1Q92558 559 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 GJA10Q969M2 543 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 ZNF668Q96K58 619 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-206ENST00000466591 PPP4R2Q9NY27 417 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 KCNJ14Q9UNX9 436 aa19.72■□□□□ 0.75
COL7A1-206ENST00000466591 TTC3P53804 2025 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 LOXHD1Q8IVV2 1947 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 GRXCR2A6NFK2 248 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 HOXA2O43364 376 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 MGEA5O60502 916 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 DAGLBQ8NCG7 672 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 AIFM3Q96NN9 605 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 NAP1L4Q99733 375 aaKnown RBP19.71■□□□□ 0.75
COL7A1-206ENST00000466591 TMEM161AQ9NX61 479 aa19.71■□□□□ 0.75
COL7A1-206ENST00000466591 DDX11L8A8MPP1 907 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 DKC1O60832 514 aaKnown RBP eCLIP19.7■□□□□ 0.74
COL7A1-206ENST00000466591 GPR32O75388 356 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 EIF4BP23588 611 aaKnown RBP19.7■□□□□ 0.74
COL7A1-206ENST00000466591 UGCGQ16739 394 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 CSPP1Q1MSJ5 1256 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 XKR3Q5GH77 459 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 FAM102BQ5T8I3 360 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 NEK9Q8TD19 979 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 POF1BQ8WVV4 589 aa19.7■□□□□ 0.74
COL7A1-206ENST00000466591 ZNF862O60290 1169 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 CCNT1O60563 726 aaKnown RBP19.69■□□□□ 0.74
COL7A1-206ENST00000466591 PSMD10O75832 226 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 ITGB1P05556 798 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 FGFR1P11362 822 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 CDC42EP1Q00587 391 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 SCRN1Q12765 414 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 HYAL1Q12794 435 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 TMEM31Q5JXX7 168 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 MOXD1Q6UVY6 613 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 NEK8Q86SG6 692 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 RBM23Q86U06 439 aaKnown RBP19.69■□□□□ 0.74
COL7A1-206ENST00000466591 FAM178BQ8IXR5 827 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 JPH2Q9BR39 696 aaPredicted RBP19.69■□□□□ 0.74
COL7A1-206ENST00000466591 GCOM2Q9BZD3 368 aaPredicted RBP19.69■□□□□ 0.74
COL7A1-206ENST00000466591 EPHX3Q9H6B9 360 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 XIRP2A4UGR9 3374 aa19.69■□□□□ 0.74
COL7A1-206ENST00000466591 EVPLQ92817 2033 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 CYP3A7-CYP3A51PA0A087WV96 503 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 C9IYK1 514 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 GCFC2P16383 781 aaKnown RBP19.68■□□□□ 0.74
COL7A1-206ENST00000466591 LAG3P18627 525 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 CYP3A7P24462 503 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 GPC3P51654 580 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 TRIM29Q14134 588 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 PIK3AP1Q6ZUJ8 805 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 POP1Q99575 1024 aaKnown RBP19.68■□□□□ 0.74
COL7A1-206ENST00000466591 ELAC1Q9H777 363 aaKnown RBP19.68■□□□□ 0.74
COL7A1-206ENST00000466591 DACT1Q9NYF0 836 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 ORC3Q9UBD5 711 aaPredicted RBP19.68■□□□□ 0.74
COL7A1-206ENST00000466591 PUF60Q9UHX1 559 aaKnown RBP19.68■□□□□ 0.74
COL7A1-206ENST00000466591 HCN4Q9Y3Q4 1203 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 STK36Q9NRP7 1315 aa19.68■□□□□ 0.74
COL7A1-206ENST00000466591 BAG4O95429 457 aaKnown RBP19.67■□□□□ 0.74
COL7A1-206ENST00000466591 LINC00271P0C7V0 271 aa19.67■□□□□ 0.74
COL7A1-206ENST00000466591 SRGAP2BP0DMP2 458 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms