RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SYCP2LQ5T4T6 812 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 NR5A1Q13285 461 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 SLC7A3Q8WY07 619 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 ZMYND8Q9ULU4 1186 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-201ENST00000328333 KRT28Q7Z3Y7 464 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 MYLK4Q86YV6 388 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-201ENST00000328333 METTL13Q8N6R0 699 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 OSBPL3Q9H4L5 887 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 UVRAGQ9P2Y5 699 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 PCDHA4Q9UN74 947 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 DMRT2Q9Y5R5 561 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 FAM187AA6NFU0 413 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 EIF3HO15372 352 aaKnown RBP eCLIP15.22■□□□□ 0.032e-6■■■■□ 25.7
COL7A1-201ENST00000328333 DIAPH2O60879 1101 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 ZMYND10O75800 440 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 TOMM70O94826 608 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 DSG1Q02413 1049 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 KCNK16Q96T55 309 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 CAB39Q9Y376 341 aaPredicted RBP15.21■□□□□ 0.03
COL7A1-201ENST00000328333 SNX2O60749 519 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 CFBP00751 764 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 HDDC2Q7Z4H3 204 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ST13P5Q8NFI4 369 aaPredicted RBP15.21■□□□□ 0.03
COL7A1-201ENST00000328333 GJA10Q969M2 543 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 CNGB3Q9NQW8 809 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ANXA1P04083 346 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 APOA4P06727 396 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 KRT7P08729 469 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 CALN1Q9BXU9 219 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 MRPL1Q9BYD6 325 aaKnown RBP15.21■□□□□ 0.03
COL7A1-201ENST00000328333 WDR70Q9NW82 654 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ADA2Q9NZK5 511 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 SLC8A2Q9UPR5 921 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 SOX6P35712 828 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ZNF790Q6PG37 636 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 PNMA1Q8ND90 353 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 FAM161BQ96MY7 647 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 KIAA1024Q9UPX6 916 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 USP19O94966 1318 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 CHL1O00533 1208 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 AGTP01019 485 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 PPARDQ03181 441 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 CSTF3Q12996 717 aaKnown RBP15.21■□□□□ 0.03
COL7A1-201ENST00000328333 TRIM16LQ309B1 348 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 NAA35Q5VZE5 725 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ARMCX2Q7L311 632 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 RSRC2Q7L4I2 434 aaKnown RBP15.21■□□□□ 0.03
COL7A1-201ENST00000328333 SGSM3Q96HU1 749 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 TRIM62Q9BVG3 475 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 WNT8AQ9H1J5 351 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 RCOR1Q9UKL0 485 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 QRICH2Q9H0J4 1663 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 TAP1Q03518 808 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ANGPTL8Q6UXH0 198 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 SUPT20HQ8NEM7 779 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 ASCC2Q9H1I8 757 aaPredicted RBP15.21■□□□□ 0.03
COL7A1-201ENST00000328333 STAP2Q9UGK3 403 aa15.21■□□□□ 0.03
COL7A1-201ENST00000328333 HDLBPQ00341 1268 aaKnown RBP15.21■□□□□ 0.02
COL7A1-201ENST00000328333 APOA5Q6Q788 366 aa15.21■□□□□ 0.02
COL7A1-201ENST00000328333 ST13P50502 369 aaKnown RBP15.21■□□□□ 0.02
COL7A1-201ENST00000328333 FAM133AQ8N9E0 248 aa15.21■□□□□ 0.02
COL7A1-201ENST00000328333 SNX19Q92543 992 aa15.21■□□□□ 0.02
COL7A1-201ENST00000328333 SEL1LQ9UBV2 794 aa15.21■□□□□ 0.02
COL7A1-201ENST00000328333 ADGRA3Q8IWK6 1321 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 ARFIP2P53365 341 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 SSH3Q8TE77 659 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 FSD1LQ9BXM9 530 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 NDST4Q9H3R1 872 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 UBN1Q9NPG3 1134 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 ZNF263O14978 683 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 SLFN12LQ6IEE8 588 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 TRIM72Q6ZMU5 477 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 ITSN1Q15811 1721 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 TMEM191CA6NGB0 347 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 ANGPT2O15123 496 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 MXI1P50539 228 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 XKR9Q5GH70 373 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 URB1O60287 2271 aaKnown RBP15.2■□□□□ 0.02
COL7A1-201ENST00000328333 M0R3G1 203 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 RCAN1P53805 252 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 FAM173BQ6P4H8 233 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 NGLY1Q96IV0 654 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 PRPF18Q99633 342 aaKnown RBP15.2■□□□□ 0.02
COL7A1-201ENST00000328333 CXCR5P32302 372 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 PGM1P36871 562 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 TP53BP2Q13625 1128 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 GCKRQ14397 625 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 SMAPO00193 183 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 UFL1O94874 794 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 NAALADL2Q58DX5 795 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 RIBC1Q8N443 379 aaPredicted RBP15.2■□□□□ 0.02
COL7A1-201ENST00000328333 NR1H4Q96RI1 486 aaPredicted RBP15.2■□□□□ 0.02
COL7A1-201ENST00000328333 BRD8Q9H0E9 1235 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 OLA1Q9NTK5 396 aaKnown RBP15.2■□□□□ 0.02
COL7A1-201ENST00000328333 PARP3Q9Y6F1 533 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 MYO1DO94832 1006 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 CEP78Q5JTW2 689 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 ACRBPQ8NEB7 543 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 PHACTR3Q96KR7 559 aa15.2■□□□□ 0.02
COL7A1-201ENST00000328333 AS3MTQ9HBK9 375 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms