RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	YDL199C	Q12407	687 aa		2.89	□□□□□ -1.95
CUP9	YPL177C	RPL6B	P05739	176 aa	Known RBP	2.88	□□□□□ -1.95
CUP9	YPL177C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	2.88	□□□□□ -1.95	not detected
CUP9	YPL177C	FUN26	P31381	517 aa		2.88	□□□□□ -1.95
CUP9	YPL177C	SPO23	P33757	523 aa		2.88	□□□□□ -1.95
CUP9	YPL177C	ADH5	P38113	351 aa	Known RBP	2.88	□□□□□ -1.95
CUP9	YPL177C	PFS1	P38872	237 aa		2.88	□□□□□ -1.95
CUP9	YPL177C	SEC27	P41811	889 aa	Known RBP	2.88	□□□□□ -1.95
CUP9	YPL177C	RPL6A	Q02326	176 aa	Known RBP	2.88	□□□□□ -1.95
CUP9	YPL177C	YDL114W	Q07530	308 aa		2.88	□□□□□ -1.95
CUP9	YPL177C	PCL9	Q12477	304 aa		2.88	□□□□□ -1.95
CUP9	YPL177C	CDC50	P25656	391 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	MSP1	P28737	362 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	PSO2	P30620	661 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	IES6	P32617	166 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	PRS1	P32895	427 aa	Known RBP	2.87	□□□□□ -1.95
CUP9	YPL177C	OM14	P38325	134 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	TIM17	P39515	158 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	YER186C	P40101	306 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	EOS1	P53938	366 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	YHC1	Q05900	231 aa	Known RBP	2.87	□□□□□ -1.95
CUP9	YPL177C	NFI1	Q12216	726 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	SKS1	Q12505	502 aa		2.87	□□□□□ -1.95
CUP9	YPL177C	TFB5	Q3E7C1	72 aa	Predicted RBP	2.87	□□□□□ -1.95
CUP9	YPL177C	FAA1	P30624	700 aa	Known RBP	2.86	□□□□□ -1.95
CUP9	YPL177C	HEM14	P40012	539 aa		2.86	□□□□□ -1.95
CUP9	YPL177C	CTK3	P46963	296 aa	Predicted RBP	2.86	□□□□□ -1.95
CUP9	YPL177C	SKI8	Q02793	397 aa	Predicted RBP	2.86	□□□□□ -1.95
CUP9	YPL177C	PEX27	Q08580	376 aa		2.86	□□□□□ -1.95
CUP9	YPL177C	MEX67	Q99257	599 aa	Known RBP	2.86	□□□□□ -1.95
CUP9	YPL177C	YOR338W	Q99326	363 aa		2.86	□□□□□ -1.95
CUP9	YPL177C	UBA1	P22515	1024 aa	Known RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	DBR1	P24309	405 aa	Known RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	CHA1	P25379	360 aa	Known RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	SWI3	P32591	825 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	PTK1	P36002	662 aa	Predicted RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	LAS1	P36146	502 aa	Predicted RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	DAD2	P36162	133 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	APE4	P38821	490 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	KEG1	P43614	200 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	CIN2	P46670	268 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	REX2	P54964	269 aa	Known RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	UTP6	Q02354	440 aa	Known RBP	2.85	□□□□□ -1.95
CUP9	YPL177C	YPR078C	Q06813	372 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	MCT1	Q12283	360 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	YOR012W	Q12351	137 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	SFG1	Q12507	346 aa		2.85	□□□□□ -1.95
CUP9	YPL177C	COX4	P04037	155 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	PRB1	P09232	635 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	MSK1	P32048	576 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	BLI1	P35727	113 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	YBL028C	P38202	106 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	SNL1	P40548	159 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	PGU1	P47180	361 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	TRF5	P48561	642 aa	Known RBP	2.84	□□□□□ -1.95
CUP9	YPL177C	RET3	P53600	189 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	YNR068C	P53754	272 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	MRPS16	Q02608	121 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	AIM33	Q04516	312 aa		2.84	□□□□□ -1.95
CUP9	YPL177C	RPS18A	P0CX55	146 aa	Known RBP	2.83	□□□□□ -1.96
CUP9	YPL177C	RPS18B	P0CX56	146 aa	Predicted RBP	2.83	□□□□□ -1.96
CUP9	YPL177C	ZRC1	P20107	442 aa		2.83	□□□□□ -1.96
CUP9	YPL177C	MRPL8	P22353	238 aa		2.83	□□□□□ -1.96
CUP9	YPL177C	POT1	P27796	417 aa	Known RBP RIP-Chip data	2.83	□□□□□ -1.96	not detected
CUP9	YPL177C	MRP21	P38175	177 aa		2.83	□□□□□ -1.96
CUP9	YPL177C	GDT1	P38301	280 aa	Predicted RBP	2.83	□□□□□ -1.96
CUP9	YPL177C	LYS12	P40495	371 aa	Known RBP	2.83	□□□□□ -1.96
CUP9	YPL177C	YLH47	Q06493	454 aa		2.83	□□□□□ -1.96
CUP9	YPL177C	SHS1	Q07657	551 aa		2.83	□□□□□ -1.96
CUP9	YPL177C	CMK2	P22517	447 aa		2.82	□□□□□ -1.96
CUP9	YPL177C	PHO84	P25297	587 aa	Known RBP	2.82	□□□□□ -1.96
CUP9	YPL177C	WSC4	P38739	605 aa		2.82	□□□□□ -1.96
CUP9	YPL177C	IGD1	P43598	195 aa		2.82	□□□□□ -1.96
CUP9	YPL177C	YNL143C	P53908	130 aa		2.82	□□□□□ -1.96
CUP9	YPL177C	ENT5	Q03769	411 aa	Known RBP	2.82	□□□□□ -1.96
CUP9	YPL177C	MSC3	Q05812	728 aa		2.82	□□□□□ -1.96
CUP9	YPL177C	DNL4	Q08387	944 aa	Predicted RBP	2.82	□□□□□ -1.96
CUP9	YPL177C	DET1	Q99288	334 aa	Known RBP	2.82	□□□□□ -1.96
CUP9	YPL177C	FSH3	Q99369	266 aa		2.82	□□□□□ -1.96
CUP9	YPL177C	STE3	P06783	470 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	RPS16A	P0CX51	143 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	RPS16B	P0CX52	143 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	GIT1	P25346	518 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	RPL16A	P26784	199 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	VPH1	P32563	840 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	SSE1	P32589	693 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	ANP1	P32629	500 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	VAM7	P32912	316 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	GPI18	P38211	433 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	LSM12	P38828	187 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	ALD5	P40047	520 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	SEC9	P40357	651 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	AIP1	P46680	615 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	YMR010W	Q03687	405 aa		2.81	□□□□□ -1.96
CUP9	YPL177C	AIM45	Q12480	344 aa	Known RBP	2.81	□□□□□ -1.96
CUP9	YPL177C	MAS2	P11914	482 aa		2.8	□□□□□ -1.96
CUP9	YPL177C	SIF2	P38262	535 aa		2.8	□□□□□ -1.96
CUP9	YPL177C	LCP5	P40079	357 aa	Predicted RBP	2.8	□□□□□ -1.96
CUP9	YPL177C	YPS5	P53057	165 aa		2.8	□□□□□ -1.96
CUP9	YPL177C	CUE3	P53137	624 aa	Known RBP	2.8	□□□□□ -1.96

Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms