RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W SKS1Q12505 502 aa1.86□□□□□ -2.11
SEC22YLR268W YCR024C-BQ3E7Z8 88 aa1.86□□□□□ -2.11
SEC22YLR268W SPT7P35177 1332 aa1.86□□□□□ -2.11
SEC22YLR268W RNA1P11745 407 aaKnown RBP1.85□□□□□ -2.11
SEC22YLR268W AAT2P23542 418 aaKnown RBP1.85□□□□□ -2.11
SEC22YLR268W PHO84P25297 587 aaKnown RBP1.85□□□□□ -2.11
SEC22YLR268W DPH2P32461 534 aa1.85□□□□□ -2.11
SEC22YLR268W VPH1P32563 840 aaKnown RBP1.85□□□□□ -2.11
SEC22YLR268W IES6P32617 166 aa1.85□□□□□ -2.11
SEC22YLR268W TOA2P32774 122 aa1.85□□□□□ -2.11
SEC22YLR268W SPT10P35208 640 aa1.85□□□□□ -2.11
SEC22YLR268W DAD2P36162 133 aa1.85□□□□□ -2.11
SEC22YLR268W YBL028CP38202 106 aa1.85□□□□□ -2.11
SEC22YLR268W RTC2P38279 296 aa1.85□□□□□ -2.11
SEC22YLR268W GEP4P38812 185 aa1.85□□□□□ -2.11
SEC22YLR268W YHR177WP38867 453 aa1.85□□□□□ -2.11
SEC22YLR268W MIG3P39943 394 aa1.85□□□□□ -2.11
SEC22YLR268W EGT2P42835 1041 aa1.85□□□□□ -2.11
SEC22YLR268W YPL107WQ02873 248 aa1.85□□□□□ -2.11
SEC22YLR268W RFM1Q12192 310 aa1.85□□□□□ -2.11
SEC22YLR268W PCL9Q12477 304 aa1.85□□□□□ -2.11
SEC22YLR268W MRPL8P22353 238 aa1.84□□□□□ -2.11
SEC22YLR268W PSO2P30620 661 aa1.84□□□□□ -2.11
SEC22YLR268W FAA1P30624 700 aaKnown RBP1.84□□□□□ -2.11
SEC22YLR268W TIR2P33890 251 aa1.84□□□□□ -2.11
SEC22YLR268W ECM8P38246 354 aa1.84□□□□□ -2.11
SEC22YLR268W SEO1P39709 593 aa1.84□□□□□ -2.11
SEC22YLR268W PTI1P39927 425 aaPredicted RBP1.84□□□□□ -2.11
SEC22YLR268W OXA1P39952 402 aa1.84□□□□□ -2.11
SEC22YLR268W YNL208WP40159 199 aaKnown RBP1.84□□□□□ -2.11
SEC22YLR268W CLD1P53264 445 aa1.84□□□□□ -2.11
SEC22YLR268W YMR010WQ03687 405 aa1.84□□□□□ -2.11
SEC22YLR268W YDL114WQ07530 308 aa1.84□□□□□ -2.11
SEC22YLR268W MFG1Q07684 458 aa1.84□□□□□ -2.11
SEC22YLR268W PEX27Q08580 376 aa1.84□□□□□ -2.11
SEC22YLR268W MEX67Q99257 599 aaKnown RBP1.84□□□□□ -2.11
SEC22YLR268W SCH9P11792 824 aaKnown RBP1.83□□□□□ -2.12
SEC22YLR268W FUN26P31381 517 aa1.83□□□□□ -2.12
SEC22YLR268W ANR2P36090 516 aaPredicted RBP1.83□□□□□ -2.12
SEC22YLR268W ADH5P38113 351 aaKnown RBP1.83□□□□□ -2.12
SEC22YLR268W SEC9P40357 651 aa1.83□□□□□ -2.12
SEC22YLR268W SEC27P41811 889 aaKnown RBP1.83□□□□□ -2.12
SEC22YLR268W ATG18P43601 500 aa1.83□□□□□ -2.12
SEC22YLR268W BNS1P50084 137 aa1.83□□□□□ -2.12
SEC22YLR268W FLC3P53121 802 aa1.83□□□□□ -2.12
SEC22YLR268W MPS2P53159 387 aa1.83□□□□□ -2.12
SEC22YLR268W CRH1P53301 507 aa1.83□□□□□ -2.12
SEC22YLR268W YNR068CP53754 272 aa1.83□□□□□ -2.12
SEC22YLR268W SKI8Q02793 397 aaPredicted RBP1.83□□□□□ -2.12
SEC22YLR268W FCY22Q12119 530 aa1.83□□□□□ -2.12
SEC22YLR268W DAP2P18962 818 aa1.82□□□□□ -2.12
SEC22YLR268W UBA1P22515 1024 aaKnown RBP1.82□□□□□ -2.12
SEC22YLR268W MSK1P32048 576 aa1.82□□□□□ -2.12
SEC22YLR268W SPO23P33757 523 aa1.82□□□□□ -2.12
SEC22YLR268W BAT1P38891 393 aaKnown RBP1.82□□□□□ -2.12
SEC22YLR268W YER186CP40101 306 aa1.82□□□□□ -2.12
SEC22YLR268W LYS12P40495 371 aaKnown RBP1.82□□□□□ -2.12
SEC22YLR268W SNL1P40548 159 aa1.82□□□□□ -2.12
SEC22YLR268W AIP1P46680 615 aaKnown RBP1.82□□□□□ -2.12
SEC22YLR268W ABM1P47146 123 aa1.82□□□□□ -2.12
SEC22YLR268W TRF5P48561 642 aaKnown RBP1.82□□□□□ -2.12
SEC22YLR268W RET3P53600 189 aa1.82□□□□□ -2.12
SEC22YLR268W REX2P54964 269 aaKnown RBP1.82□□□□□ -2.12
SEC22YLR268W YET2Q04210 160 aa1.82□□□□□ -2.12
SEC22YLR268W YPR078CQ06813 372 aa1.82□□□□□ -2.12
SEC22YLR268W NFI1Q12216 726 aa1.82□□□□□ -2.12
SEC22YLR268W HMS1Q12398 434 aa1.82□□□□□ -2.12
SEC22YLR268W PRM7Q12459 698 aa1.82□□□□□ -2.12
SEC22YLR268W NBL1Q3E7Y6 73 aa1.82□□□□□ -2.12
SEC22YLR268W NAG1Q8TGN9 163 aa1.82□□□□□ -2.12
SEC22YLR268W DBR1P24309 405 aaKnown RBP1.81□□□□□ -2.12
SEC22YLR268W RDS1P25611 832 aa1.81□□□□□ -2.12
SEC22YLR268W CDC50P25656 391 aa1.81□□□□□ -2.12
SEC22YLR268W RPL16AP26784 199 aaKnown RBP1.81□□□□□ -2.12
SEC22YLR268W EFB1P32471 206 aaKnown RBP1.81□□□□□ -2.12
SEC22YLR268W SSE1P32589 693 aaKnown RBP1.81□□□□□ -2.12
SEC22YLR268W VAM7P32912 316 aa1.81□□□□□ -2.12
SEC22YLR268W LAS1P36146 502 aaPredicted RBP1.81□□□□□ -2.12
SEC22YLR268W SIF2P38262 535 aa1.81□□□□□ -2.12
SEC22YLR268W RPA34P47006 233 aaPredicted RBP1.81□□□□□ -2.12
SEC22YLR268W MRPS16Q02608 121 aa1.81□□□□□ -2.12
SEC22YLR268W SHS1Q07657 551 aa1.81□□□□□ -2.12
SEC22YLR268W YDL199CQ12407 687 aa1.81□□□□□ -2.12
SEC22YLR268W FSH3Q99369 266 aa1.81□□□□□ -2.12
SEC22YLR268W MAS1P10507 462 aa1.8□□□□□ -2.12
SEC22YLR268W MAS2P11914 482 aa1.8□□□□□ -2.12
SEC22YLR268W THR4P16120 514 aaKnown RBP1.8□□□□□ -2.12
SEC22YLR268W OPI1P21957 404 aa1.8□□□□□ -2.12
SEC22YLR268W POT1P27796 417 aaKnown RBP RIP-Chip data1.8□□□□□ -2.12not detected
SEC22YLR268W OM14P38325 134 aa1.8□□□□□ -2.12
SEC22YLR268W LSM12P38828 187 aaKnown RBP1.8□□□□□ -2.12
SEC22YLR268W PFS1P38872 237 aa1.8□□□□□ -2.12
SEC22YLR268W LCP5P40079 357 aaPredicted RBP1.8□□□□□ -2.12
SEC22YLR268W CWC22P53333 577 aaKnown RBP1.8□□□□□ -2.12
SEC22YLR268W YNL143CP53908 130 aa1.8□□□□□ -2.12
SEC22YLR268W KTR6P54070 446 aa1.8□□□□□ -2.12
SEC22YLR268W UTP6Q02354 440 aaKnown RBP1.8□□□□□ -2.12
SEC22YLR268W YMR310CQ04867 317 aaPredicted RBP1.8□□□□□ -2.12
SEC22YLR268W YHC1Q05900 231 aaKnown RBP1.8□□□□□ -2.12
SEC22YLR268W DBP9Q06218 594 aaKnown RBP1.8□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms