RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	SWC5	P38326	303 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	OSH3	P38713	996 aa	Known RBP	2.19	□□□□□ -2.06
SNU114	YKL173W	SIP3	P38717	1229 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	SMF2	P38778	549 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	SBE22	P38814	852 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	PAC11	P40960	533 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	POP1	P41812	875 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	RET3	P53600	189 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	RPM2	Q02773	1202 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	RSN1	Q03516	953 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	ARP10	Q04549	284 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	ERV41	Q04651	352 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	RRN11	Q04712	507 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	YLR112W	Q12130	139 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	ORT1	Q12375	292 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	POM152	P39685	1337 aa		2.19	□□□□□ -2.06
SNU114	YKL173W	KSS1	P14681	368 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	MSS116	P15424	664 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	THR4	P16120	514 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	CKA2	P19454	339 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	YCR022C	P25620	114 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	ECM25	P32525	599 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	BZZ1	P38822	633 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	DHH1	P39517	506 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	SPG5	P42933	373 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	GUF1	P46943	645 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	ABM1	P47146	123 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	VPS60	Q03390	229 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	RAD61	Q99359	647 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	SPO12	P17123	173 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	UGA1	P17649	471 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	SNC1	P31109	117 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	TPS2	P31688	896 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	CYS4	P32582	507 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	RSM22	P36056	628 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	OLA1	P38219	394 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	YRB2	P40517	327 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	HAM1	P47119	197 aa	Known RBP	2.18	□□□□□ -2.06
SNU114	YKL173W	BRO1	P48582	844 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	PCP1	P53259	346 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	PGA2	P53903	129 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	SRL4	Q03085	281 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	MSS11	Q03825	758 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	YLR297W	Q05899	129 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	SSK1	Q07084	712 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	RDR1	Q08904	546 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	RRI1	Q12468	440 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	SPO24	Q3E752	67 aa		2.18	□□□□□ -2.06
SNU114	YKL173W	DAL81	P21657	970 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RPI1	P23250	407 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	RAD57	P25301	460 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	ACH1	P32316	526 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	ERG1	P32476	496 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	YER079W	P40052	210 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	LIA1	P47120	325 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	YDL186W	P48568	277 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RLI1	Q03195	608 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	RTT103	Q05543	409 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	YLL007C	Q07799	665 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	CDC21	P06785	304 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	MAS1	P10507	462 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	SRV2	P17555	526 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	APA2	P22108	325 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	YCR007C	P25354	239 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	GID7	P25569	745 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	ICL1	P28240	557 aa	Predicted RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	YPS1	P32329	569 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	ALP1	P38971	573 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	PCF11	P39081	626 aa	Predicted RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	VPS52	P39904	641 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RSM25	P40496	264 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	FMP33	P46998	180 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	GTO1	P48239	356 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RTN1	Q04947	295 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	FUS2	Q05670	677 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	SRL2	Q12020	392 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RUP1	Q12242	671 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	ATG34	Q12292	412 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	YDR262W	Q12331	272 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	SEC7	P11075	2009 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	CDC36	P06100	191 aa	Predicted RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	FUS3	P16892	353 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	ATO2	P32907	282 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	PHD1	P36093	366 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	PET100	P38958	111 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	YER085C	P40058	173 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RTR1	P40084	226 aa	Predicted RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	OTU1	P43558	301 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	RRT5	P43607	289 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	STE24	P47154	453 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	GPI1	P53306	609 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	ESBP6	P53918	673 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	CTL1	Q03220	320 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	RRG8	Q06109	277 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	BCP1	Q06338	283 aa		2.17	□□□□□ -2.06
SNU114	YKL173W	SKI7	Q08491	747 aa	Predicted RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	RRP12	Q12754	1228 aa	Known RBP	2.17	□□□□□ -2.06
SNU114	YKL173W	RNR2	P09938	399 aa	Known RBP	2.16	□□□□□ -2.06
SNU114	YKL173W	TCP1	P12612	559 aa	Known RBP	2.16	□□□□□ -2.06
SNU114	YKL173W	SEN2	P16658	377 aa		2.16	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 41.3 ms