RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	DST1	P07273	309 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	RPL4A	P10664	362 aa	Known RBP	4.4	□□□□□ -1.71
CAF16	YFL028C	NDI1	P32340	513 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	NDC1	P32500	655 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	MUD1	P32605	298 aa	Known RBP	4.4	□□□□□ -1.71
CAF16	YFL028C	RPC25	P35718	212 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	YET1	P35723	206 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	YBR056W	P38081	501 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	MRX3	P38172	270 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	HAT2	P39984	401 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	GCD10	P41814	478 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	TES1	P41903	349 aa	Known RBP	4.4	□□□□□ -1.71
CAF16	YFL028C	LAM5	P43560	674 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	RPL4B	P49626	362 aa	Known RBP	4.4	□□□□□ -1.71
CAF16	YFL028C	AVT4	P50944	713 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	SHE10	P53075	577 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	POP6	P53218	158 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	TIM8	P57744	87 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	ODC1	Q03028	310 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	BET5	Q03630	159 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	HCR1	Q05775	265 aa	Known RBP	4.4	□□□□□ -1.71
CAF16	YFL028C	YLR281C	Q05863	155 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	SHS1	Q07657	551 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	NSE1	Q07913	336 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	ATG34	Q12292	412 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	SRN2	Q99176	213 aa		4.4	□□□□□ -1.71
CAF16	YFL028C	MTF1	P14908	341 aa	Known RBP	4.39	□□□□□ -1.71
CAF16	YFL028C	LSB5	P25369	354 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	SKG6	P32900	734 aa	Predicted RBP	4.39	□□□□□ -1.71
CAF16	YFL028C	MRPL10	P36520	322 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	SPP381	P38282	291 aa	Predicted RBP	4.39	□□□□□ -1.71
CAF16	YFL028C	YHL026C	P38740	315 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	BZZ1	P38822	633 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	RTT107	P38850	1070 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	YND1	P40009	630 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	PAC11	P40960	533 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	HSH155	P49955	971 aa	Known RBP	4.39	□□□□□ -1.71
CAF16	YFL028C	YNR068C	P53754	272 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	YNL134C	P53912	376 aa	Known RBP	4.39	□□□□□ -1.71
CAF16	YFL028C	RSN1	Q03516	953 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	URH1	Q04179	340 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	IPK1	Q06667	281 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	RLP24	Q07915	199 aa	Known RBP	4.39	□□□□□ -1.71
CAF16	YFL028C	SGT1	Q08446	395 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	MUM3	Q08750	479 aa		4.39	□□□□□ -1.71
CAF16	YFL028C	YLR422W	Q06409	1932 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	ARG4	P04076	463 aa	Predicted RBP	4.38	□□□□□ -1.71
CAF16	YFL028C	STE3	P06783	470 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	TAL1	P15019	335 aa	Known RBP	4.38	□□□□□ -1.71
CAF16	YFL028C	SPO12	P17123	173 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	TIP1	P27654	210 aa	Predicted RBP	4.38	□□□□□ -1.71
CAF16	YFL028C	CRM1	P30822	1084 aa	Known RBP	4.38	□□□□□ -1.71
CAF16	YFL028C	GLC7	P32598	312 aa	Known RBP	4.38	□□□□□ -1.71
CAF16	YFL028C	BUD2	P33314	1104 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	SLX1	P38324	304 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	YER186C	P40101	306 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	SHE4	P51534	789 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	STD1	Q02794	444 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	PIR3	Q03180	325 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	MMT1	Q03218	510 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	SKI7	Q08491	747 aa	Predicted RBP	4.38	□□□□□ -1.71
CAF16	YFL028C	TIM18	Q08749	192 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	AHC1	Q12433	566 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	RMD5	Q12508	421 aa		4.38	□□□□□ -1.71
CAF16	YFL028C	OPI3	P05375	206 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	ASP3-2	P0CX77	362 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	ASP3-3	P0CX78	362 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	ASP3-4	P0CX79	362 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	ASP3-1	P0CZ17	362 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	MRS3	P10566	314 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	SLM5	P25345	492 aa	Known RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	PRR1	P28708	518 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	CSE2	P33308	149 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	MTC4	P38335	694 aa	Known RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	CTM1	P38818	585 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	SPT8	P38915	602 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	ALG8	P40351	577 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	RPA34	P47006	233 aa	Predicted RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	YNR048W	P53740	393 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	ALG11	P53954	548 aa	Known RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	UTP6	Q02354	440 aa	Known RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	CWC21	Q03375	135 aa	Known RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	DNL4	Q08387	944 aa	Predicted RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	PKH2	Q12236	1081 aa	Known RBP	4.37	□□□□□ -1.71
CAF16	YFL028C	RGT2	Q12300	763 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	RNH203	Q12338	110 aa		4.37	□□□□□ -1.71
CAF16	YFL028C	TEF1	P02994	458 aa	Known RBP	4.36	□□□□□ -1.71
CAF16	YFL028C	PRP16	P15938	1071 aa	Predicted RBP	4.36	□□□□□ -1.71
CAF16	YFL028C	CDC42	P19073	191 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	RSA4	P25382	515 aa	Known RBP	4.36	□□□□□ -1.71
CAF16	YFL028C	YKL097C	P34245	136 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	MSG5	P38590	489 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	DHH1	P39517	506 aa	Known RBP	4.36	□□□□□ -1.71
CAF16	YFL028C	MMF1	P40185	145 aa	Known RBP	4.36	□□□□□ -1.71
CAF16	YFL028C	RRT5	P43607	289 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	RTT101	P47050	842 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	RPM2	Q02773	1202 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	MRP51	Q02950	344 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	YLR297W	Q05899	129 aa		4.36	□□□□□ -1.71
CAF16	YFL028C	SRL1	Q08673	210 aa		4.36	□□□□□ -1.71

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