RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	GPH1	P06738	902 aa	Known RBP	4.94	□□□□□ -1.62
UBP9	YER098W	APN1	P22936	367 aa		4.94	□□□□□ -1.62
UBP9	YER098W	SGV1	P23293	657 aa	Known RBP	4.94	□□□□□ -1.62
UBP9	YER098W	YBL010C	P32788	280 aa		4.94	□□□□□ -1.62
UBP9	YER098W	PTK1	P36002	662 aa	Predicted RBP	4.94	□□□□□ -1.62
UBP9	YER098W	UIP5	P36137	443 aa		4.94	□□□□□ -1.62
UBP9	YER098W	PCA1	P38360	1216 aa		4.94	□□□□□ -1.62
UBP9	YER098W	MUP3	P38734	546 aa		4.94	□□□□□ -1.62
UBP9	YER098W	YEL020C	P39994	560 aa		4.94	□□□□□ -1.62
UBP9	YER098W	IRC18	P47056	224 aa		4.94	□□□□□ -1.62
UBP9	YER098W	ARO8	P53090	500 aa	Known RBP	4.94	□□□□□ -1.62
UBP9	YER098W	CUS2	P53830	285 aa	Predicted RBP	4.94	□□□□□ -1.62
UBP9	YER098W	GRX5	Q02784	150 aa		4.94	□□□□□ -1.62
UBP9	YER098W	APC4	Q04601	652 aa		4.94	□□□□□ -1.62
UBP9	YER098W	YLR456W	Q06199	204 aa		4.94	□□□□□ -1.62
UBP9	YER098W	LCB4	Q12246	624 aa		4.94	□□□□□ -1.62
UBP9	YER098W	ATG34	Q12292	412 aa		4.94	□□□□□ -1.62
UBP9	YER098W	ILV1	P00927	576 aa	Known RBP	4.94	□□□□□ -1.62
UBP9	YER098W	BCY1	P07278	416 aa	Known RBP	4.94	□□□□□ -1.62
UBP9	YER098W	ERG4	P25340	473 aa		4.94	□□□□□ -1.62
UBP9	YER098W	ADH7	P25377	361 aa		4.94	□□□□□ -1.62
UBP9	YER098W	ARO7	P32178	256 aa		4.94	□□□□□ -1.62
UBP9	YER098W	GPX2	P38143	162 aa		4.94	□□□□□ -1.62
UBP9	YER098W	YBR137W	P38276	179 aa		4.94	□□□□□ -1.62
UBP9	YER098W	PET117	Q02771	107 aa		4.94	□□□□□ -1.62
UBP9	YER098W	ARP10	Q04549	284 aa		4.94	□□□□□ -1.62
UBP9	YER098W	CRT10	Q08226	957 aa		4.94	□□□□□ -1.62
UBP9	YER098W	YOL159C	Q08300	171 aa		4.94	□□□□□ -1.62
UBP9	YER098W	YOR214C	Q12282	236 aa		4.94	□□□□□ -1.62
UBP9	YER098W	TSA1	P34760	196 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	JEN1	P36035	616 aa		4.93	□□□□□ -1.62
UBP9	YER098W	SPC34	P36131	295 aa		4.93	□□□□□ -1.62
UBP9	YER098W	GAA1	P39012	614 aa		4.93	□□□□□ -1.62
UBP9	YER098W	PMT6	P42934	759 aa		4.93	□□□□□ -1.62
UBP9	YER098W	SER2	P42941	309 aa		4.93	□□□□□ -1.62
UBP9	YER098W	QRI1	P43123	477 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	YFL012W	P43580	148 aa		4.93	□□□□□ -1.62
UBP9	YER098W	DPB11	P47027	764 aa	Predicted RBP	4.93	□□□□□ -1.62
UBP9	YER098W	YGR026W	P53217	278 aa		4.93	□□□□□ -1.62
UBP9	YER098W	EFM6	P53970	246 aa		4.93	□□□□□ -1.62
UBP9	YER098W	ENT5	Q03769	411 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	YDR249C	Q03787	373 aa		4.93	□□□□□ -1.62
UBP9	YER098W	DPB4	Q04603	196 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	IVY1	Q04934	453 aa		4.93	□□□□□ -1.62
UBP9	YER098W	PEX27	Q08580	376 aa		4.93	□□□□□ -1.62
UBP9	YER098W	YDR061W	Q12298	539 aa		4.93	□□□□□ -1.62
UBP9	YER098W	YPR1	Q12458	312 aa		4.93	□□□□□ -1.62
UBP9	YER098W	TIM9	O74700	87 aa		4.93	□□□□□ -1.62
UBP9	YER098W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
UBP9	YER098W	RPS3	P05750	240 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	CBP6	P07253	162 aa	Predicted RBP	4.93	□□□□□ -1.62
UBP9	YER098W	CAP2	P13517	287 aa		4.93	□□□□□ -1.62
UBP9	YER098W	GIT1	P25346	518 aa		4.93	□□□□□ -1.62
UBP9	YER098W	CHA1	P25379	360 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	SOF1	P33750	489 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	SRB2	P34162	210 aa		4.93	□□□□□ -1.62
UBP9	YER098W	YBR144C	P34215	104 aa		4.93	□□□□□ -1.62
UBP9	YER098W	CBR1	P38626	284 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	BZZ1	P38822	633 aa		4.93	□□□□□ -1.62
UBP9	YER098W	THO1	P40040	218 aa	Known RBP	4.93	□□□□□ -1.62
UBP9	YER098W	SOK1	P40317	901 aa		4.93	□□□□□ -1.62
UBP9	YER098W	COS4	P43542	379 aa		4.93	□□□□□ -1.62
UBP9	YER098W	MNN5	P46982	586 aa		4.93	□□□□□ -1.62
UBP9	YER098W	CPR8	P53728	308 aa		4.93	□□□□□ -1.62
UBP9	YER098W	COS1	P53822	381 aa		4.93	□□□□□ -1.62
UBP9	YER098W	TIM8	P57744	87 aa		4.93	□□□□□ -1.62
UBP9	YER098W	SNZ1	Q03148	297 aa		4.93	□□□□□ -1.62
UBP9	YER098W	MAK3	Q03503	176 aa		4.93	□□□□□ -1.62
UBP9	YER098W	HSP31	Q04432	237 aa		4.93	□□□□□ -1.62
UBP9	YER098W	DCI1	Q08558	271 aa		4.93	□□□□□ -1.62
UBP9	YER098W	FKS1	P38631	1876 aa	Known RBP	4.92	□□□□□ -1.62
UBP9	YER098W	ATP6	P00854	259 aa		4.92	□□□□□ -1.62
UBP9	YER098W	UGA1	P17649	471 aa		4.92	□□□□□ -1.62
UBP9	YER098W	SEC1	P30619	724 aa	Known RBP	4.92	□□□□□ -1.62
UBP9	YER098W	HYM1	P32464	399 aa		4.92	□□□□□ -1.62
UBP9	YER098W	SKG1	P36169	355 aa		4.92	□□□□□ -1.62
UBP9	YER098W	MLH1	P38920	769 aa		4.92	□□□□□ -1.62
UBP9	YER098W	ATF1	P40353	525 aa		4.92	□□□□□ -1.62
UBP9	YER098W	YFR020W	P43600	232 aa		4.92	□□□□□ -1.62
UBP9	YER098W	VPS73	P53142	486 aa	Known RBP	4.92	□□□□□ -1.62
UBP9	YER098W	ATG4	P53867	494 aa		4.92	□□□□□ -1.62
UBP9	YER098W	RVB1	Q03940	463 aa	Known RBP	4.92	□□□□□ -1.62
UBP9	YER098W	RRP17	Q04031	235 aa	Predicted RBP	4.92	□□□□□ -1.62
UBP9	YER098W	DIS3	Q08162	1001 aa	Known RBP	4.92	□□□□□ -1.62
UBP9	YER098W	INP53	Q12271	1107 aa		4.92	□□□□□ -1.62
UBP9	YER098W	MOT1	P32333	1867 aa		4.92	□□□□□ -1.62
UBP9	YER098W	RAD7	P06779	565 aa		4.92	□□□□□ -1.62
UBP9	YER098W	CCA1	P21269	546 aa		4.92	□□□□□ -1.62
UBP9	YER098W	PPH22	P23595	377 aa		4.92	□□□□□ -1.62
UBP9	YER098W	CNB1	P25296	175 aa		4.92	□□□□□ -1.62
UBP9	YER098W	NTG1	P31378	399 aa		4.92	□□□□□ -1.62
UBP9	YER098W	RML2	P32611	393 aa		4.92	□□□□□ -1.62
UBP9	YER098W	ADH5	P38113	351 aa	Known RBP	4.92	□□□□□ -1.62
UBP9	YER098W	SSO2	P39926	295 aa		4.92	□□□□□ -1.62
UBP9	YER098W	SCC4	P40090	624 aa		4.92	□□□□□ -1.62
UBP9	YER098W	PKP1	P40530	394 aa		4.92	□□□□□ -1.62
UBP9	YER098W	NAS2	P40555	220 aa		4.92	□□□□□ -1.62
UBP9	YER098W	GSH2	Q08220	491 aa		4.92	□□□□□ -1.62
UBP9	YER098W	RPN6	Q12377	434 aa		4.92	□□□□□ -1.62
UBP9	YER098W	YHR213W-A	Q8TGT4	77 aa		4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms