RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W CPR2P23285 205 aa0.56□□□□□ -2.32
PRP42YDR235W GIT1P25346 518 aa0.56□□□□□ -2.32
PRP42YDR235W RPC53P25441 422 aa0.56□□□□□ -2.32
PRP42YDR235W FUN26P31381 517 aa0.56□□□□□ -2.32
PRP42YDR235W PDC2P32896 925 aa0.56□□□□□ -2.32
PRP42YDR235W SPO23P33757 523 aa0.56□□□□□ -2.32
PRP42YDR235W TIR2P33890 251 aa0.56□□□□□ -2.32
PRP42YDR235W DOA1P36037 715 aa0.56□□□□□ -2.32
PRP42YDR235W MCR1P36060 302 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W GPX2P38143 162 aa0.56□□□□□ -2.32
PRP42YDR235W LSM12P38828 187 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W CHL4P38907 458 aa0.56□□□□□ -2.32
PRP42YDR235W FAD1P38913 306 aa0.56□□□□□ -2.32
PRP42YDR235W STE24P47154 453 aa0.56□□□□□ -2.32
PRP42YDR235W TCB2P48231 1178 aa0.56□□□□□ -2.32
PRP42YDR235W TRF5P48561 642 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W TOM22P49334 152 aa0.56□□□□□ -2.32
PRP42YDR235W VEL1P53058 206 aa0.56□□□□□ -2.32
PRP42YDR235W ROG1P53118 685 aa0.56□□□□□ -2.32
PRP42YDR235W YGR111WP53265 400 aa0.56□□□□□ -2.32
PRP42YDR235W RMT2Q03305 412 aa0.56□□□□□ -2.32
PRP42YDR235W YMR010WQ03687 405 aa0.56□□□□□ -2.32
PRP42YDR235W ENT5Q03769 411 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W YDR115WQ04598 105 aa0.56□□□□□ -2.32
PRP42YDR235W YHC1Q05900 231 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W ECM7Q06200 448 aa0.56□□□□□ -2.32
PRP42YDR235W ASA1Q06822 443 aa0.56□□□□□ -2.32
PRP42YDR235W DCI1Q08558 271 aa0.56□□□□□ -2.32
PRP42YDR235W RNH203Q12338 110 aa0.56□□□□□ -2.32
PRP42YDR235W HMS1Q12398 434 aa0.56□□□□□ -2.32
PRP42YDR235W YOP1Q12402 180 aa0.56□□□□□ -2.32
PRP42YDR235W ISA2Q12425 185 aa0.56□□□□□ -2.32
PRP42YDR235W MDH1P17505 334 aaKnown RBP RIP-Chip data0.56□□□□□ -2.32not detected
PRP42YDR235W PHO91P27514 894 aa0.56□□□□□ -2.32
PRP42YDR235W DBF4P32325 704 aa0.56□□□□□ -2.32
PRP42YDR235W NRP1P32770 719 aaKnown RBP RIP-Chip data0.56□□□□□ -2.32not detected
PRP42YDR235W YSC83P32792 385 aa0.56□□□□□ -2.32
PRP42YDR235W SWE1P32944 819 aa0.56□□□□□ -2.32
PRP42YDR235W YBR241CP38142 488 aa0.56□□□□□ -2.32
PRP42YDR235W QDR3P38227 689 aa0.56□□□□□ -2.32
PRP42YDR235W ECM34P38728 170 aa0.56□□□□□ -2.32
PRP42YDR235W SEC27P41811 889 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W TOS2P50078 622 aa0.56□□□□□ -2.32
PRP42YDR235W VHT1P53241 593 aa0.56□□□□□ -2.32
PRP42YDR235W PRP38Q00723 242 aaPredicted RBP0.56□□□□□ -2.32
PRP42YDR235W ERO1Q03103 563 aa0.56□□□□□ -2.32
PRP42YDR235W SPC19Q03954 165 aa0.56□□□□□ -2.32
PRP42YDR235W FSH2Q05015 223 aa0.56□□□□□ -2.32
PRP42YDR235W YDR341CQ05506 607 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W MSC3Q05812 728 aa0.56□□□□□ -2.32
PRP42YDR235W YLR456WQ06199 204 aa0.56□□□□□ -2.32
PRP42YDR235W YLR177WQ06251 628 aa0.56□□□□□ -2.32
PRP42YDR235W NSE1Q07913 336 aa0.56□□□□□ -2.32
PRP42YDR235W UAF30Q08747 228 aa0.56□□□□□ -2.32
PRP42YDR235W SRO7Q12038 1033 aa0.56□□□□□ -2.32
PRP42YDR235W TIR4Q12218 487 aaPredicted RBP0.56□□□□□ -2.32
PRP42YDR235W MCT1Q12283 360 aa0.56□□□□□ -2.32
PRP42YDR235W MEX67Q99257 599 aaKnown RBP0.56□□□□□ -2.32
PRP42YDR235W TPI1P00942 248 aaKnown RBP0.55□□□□□ -2.32
PRP42YDR235W RPL12AP0CX53 165 aaKnown RBP0.55□□□□□ -2.32
PRP42YDR235W RPL12BP0CX54 165 aa0.55□□□□□ -2.32
PRP42YDR235W EPT1P22140 391 aa0.55□□□□□ -2.32
PRP42YDR235W TOA1P32773 286 aa0.55□□□□□ -2.32
PRP42YDR235W HEM14P40012 539 aa0.55□□□□□ -2.32
PRP42YDR235W PAC11P40960 533 aa0.55□□□□□ -2.32
PRP42YDR235W KEG1P43614 200 aa0.55□□□□□ -2.32
PRP42YDR235W CIN2P46670 268 aa0.55□□□□□ -2.32
PRP42YDR235W COQ5P49017 307 aa0.55□□□□□ -2.32
PRP42YDR235W PMT5P52867 743 aa0.55□□□□□ -2.32
PRP42YDR235W SEH1P53011 349 aaKnown RBP0.55□□□□□ -2.32
PRP42YDR235W YGR067CP53243 804 aa0.55□□□□□ -2.32
PRP42YDR235W RRN9P53437 365 aa0.55□□□□□ -2.32
PRP42YDR235W PRP3Q03338 469 aaPredicted RBP0.55□□□□□ -2.32
PRP42YDR235W VPS72Q03388 795 aa0.55□□□□□ -2.32
PRP42YDR235W URC2Q04411 772 aa0.55□□□□□ -2.32
PRP42YDR235W LDS2Q08218 356 aa0.55□□□□□ -2.32
PRP42YDR235W YOR376WQ08900 122 aa0.55□□□□□ -2.32
PRP42YDR235W SFM1Q12314 213 aa0.55□□□□□ -2.32
PRP42YDR235W GPM3Q12326 303 aa0.55□□□□□ -2.32
PRP42YDR235W LDB17Q12342 491 aa0.55□□□□□ -2.32
PRP42YDR235W HEM4P06174 275 aa0.54□□□□□ -2.32
PRP42YDR235W CHA1P25379 360 aaKnown RBP0.54□□□□□ -2.32
PRP42YDR235W RPL16AP26784 199 aaKnown RBP0.54□□□□□ -2.32
PRP42YDR235W ZIP1P31111 875 aa0.54□□□□□ -2.32
PRP42YDR235W LDS1P31379 325 aa0.54□□□□□ -2.32
PRP42YDR235W LTV1P34078 463 aa0.54□□□□□ -2.32
PRP42YDR235W COS9P36034 407 aa0.54□□□□□ -2.32
PRP42YDR235W SMP1P38128 452 aa0.54□□□□□ -2.32
PRP42YDR235W MNL1P38888 796 aa0.54□□□□□ -2.32
PRP42YDR235W FHL1P39521 936 aa0.54□□□□□ -2.32
PRP42YDR235W YIR035CP40579 254 aa0.54□□□□□ -2.32
PRP42YDR235W STB1P42845 420 aa0.54□□□□□ -2.32
PRP42YDR235W ABM1P47146 123 aa0.54□□□□□ -2.32
PRP42YDR235W BIO3P50277 480 aa0.54□□□□□ -2.32
PRP42YDR235W RTT102P53330 157 aa0.54□□□□□ -2.32
PRP42YDR235W CWC22P53333 577 aaKnown RBP0.54□□□□□ -2.32
PRP42YDR235W RNH201P53942 307 aa0.54□□□□□ -2.32
PRP42YDR235W VAC7P53950 1165 aa0.54□□□□□ -2.32
PRP42YDR235W YDR541CQ03049 344 aa0.54□□□□□ -2.32
PRP42YDR235W GYL1Q04322 720 aa0.54□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms