RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C HIF1Q12373 385 aa1.45□□□□□ -2.18
PCF11YDR228C YOP1Q12402 180 aa1.45□□□□□ -2.18
PCF11YDR228C TIR2P33890 251 aa1.44□□□□□ -2.18
PCF11YDR228C INM1P38710 295 aa1.44□□□□□ -2.18
PCF11YDR228C CIN2P46670 268 aa1.44□□□□□ -2.18
PCF11YDR228C NSE1Q07913 336 aa1.44□□□□□ -2.18
PCF11YDR228C PCL9Q12477 304 aa1.44□□□□□ -2.18
PCF11YDR228C RPL12AP0CX53 165 aaKnown RBP1.43□□□□□ -2.18
PCF11YDR228C RPL12BP0CX54 165 aa1.43□□□□□ -2.18
PCF11YDR228C ERV1P27882 189 aa1.43□□□□□ -2.18
PCF11YDR228C ANP1P32629 500 aa1.43□□□□□ -2.18
PCF11YDR228C FRM2P37261 193 aa1.43□□□□□ -2.18
PCF11YDR228C ZTA1P38230 334 aaKnown RBP1.43□□□□□ -2.18
PCF11YDR228C YOR376WQ08900 122 aa1.43□□□□□ -2.18
PCF11YDR228C CDC21P06785 304 aa1.43□□□□□ -2.18
PCF11YDR228C ECM8P38246 354 aa1.43□□□□□ -2.18
PCF11YDR228C SHE3P38272 425 aaKnown RBP1.43□□□□□ -2.18
PCF11YDR228C TCB2P48231 1178 aa1.43□□□□□ -2.18
PCF11YDR228C PMT5P52867 743 aa1.43□□□□□ -2.18
PCF11YDR228C REX2P54964 269 aaKnown RBP1.43□□□□□ -2.18
PCF11YDR228C MEX67Q99257 599 aaKnown RBP1.43□□□□□ -2.18
PCF11YDR228C GEP4P38812 185 aa1.42□□□□□ -2.18
PCF11YDR228C TRF5P48561 642 aaKnown RBP1.42□□□□□ -2.18
PCF11YDR228C ZRG17P53735 605 aa1.42□□□□□ -2.18
PCF11YDR228C TRM112P53738 135 aaPredicted RBP1.42□□□□□ -2.18
PCF11YDR228C LDB17Q12342 491 aa1.42□□□□□ -2.18
PCF11YDR228C ASP3-2P0CX77 362 aa1.41□□□□□ -2.18
PCF11YDR228C ASP3-3P0CX78 362 aa1.41□□□□□ -2.18
PCF11YDR228C ASP3-4P0CX79 362 aa1.41□□□□□ -2.18
PCF11YDR228C ASP3-1P0CZ17 362 aa1.41□□□□□ -2.18
PCF11YDR228C CLB1P24868 471 aa1.41□□□□□ -2.18
PCF11YDR228C RIM1P32445 135 aaKnown RBP1.41□□□□□ -2.18
PCF11YDR228C CBF5P33322 483 aaKnown RBP RIP-Chip data1.41□□□□□ -2.18not detected
PCF11YDR228C ECM34P38728 170 aa1.41□□□□□ -2.18
PCF11YDR228C TRR2P38816 342 aa1.41□□□□□ -2.18
PCF11YDR228C ATM1P40416 690 aa1.41□□□□□ -2.18
PCF11YDR228C YIR035CP40579 254 aa1.41□□□□□ -2.18
PCF11YDR228C URC2Q04411 772 aa1.41□□□□□ -2.18
PCF11YDR228C ERB1Q04660 807 aaKnown RBP1.41□□□□□ -2.18
PCF11YDR228C YLR456WQ06199 204 aa1.41□□□□□ -2.18
PCF11YDR228C NOP6Q07623 225 aaKnown RBP1.41□□□□□ -2.18
PCF11YDR228C HRT1Q08273 121 aa1.41□□□□□ -2.18
PCF11YDR228C DDC1Q08949 612 aa1.41□□□□□ -2.18
PCF11YDR228C AEP3Q12089 606 aa1.41□□□□□ -2.18
PCF11YDR228C CPR2P23285 205 aa1.41□□□□□ -2.18
PCF11YDR228C SRB2P34162 210 aa1.41□□□□□ -2.18
PCF11YDR228C BYE1P36106 594 aa1.41□□□□□ -2.18
PCF11YDR228C SHE1P38200 338 aa1.41□□□□□ -2.18
PCF11YDR228C RMI1Q02685 241 aa1.41□□□□□ -2.18
PCF11YDR228C YDR115WQ04598 105 aa1.41□□□□□ -2.18
PCF11YDR228C ECM7Q06200 448 aa1.41□□□□□ -2.18
PCF11YDR228C BUD21Q08492 214 aaPredicted RBP1.41□□□□□ -2.18
PCF11YDR228C UAF30Q08747 228 aa1.41□□□□□ -2.18
PCF11YDR228C VPS54Q12071 889 aa1.41□□□□□ -2.18
PCF11YDR228C RRG1Q12167 365 aaPredicted RBP1.41□□□□□ -2.18
PCF11YDR228C OPI3P05375 206 aa1.4□□□□□ -2.19
PCF11YDR228C TPK3P05986 398 aa1.4□□□□□ -2.19
PCF11YDR228C ARF1P11076 181 aaKnown RBP1.4□□□□□ -2.19
PCF11YDR228C UNG1P12887 359 aa1.4□□□□□ -2.19
PCF11YDR228C FUS3P16892 353 aaKnown RBP1.4□□□□□ -2.19
PCF11YDR228C QDR3P38227 689 aa1.4□□□□□ -2.19
PCF11YDR228C WSC4P38739 605 aa1.4□□□□□ -2.19
PCF11YDR228C COS4P43542 379 aa1.4□□□□□ -2.19
PCF11YDR228C VEL1P53058 206 aa1.4□□□□□ -2.19
PCF11YDR228C ASA1Q06822 443 aa1.4□□□□□ -2.19
PCF11YDR228C ATP16Q12165 160 aa1.4□□□□□ -2.19
PCF11YDR228C LDS1P31379 325 aa1.39□□□□□ -2.19
PCF11YDR228C DBP7P36120 742 aaKnown RBP1.39□□□□□ -2.19
PCF11YDR228C SRB7P47822 140 aa1.39□□□□□ -2.19
PCF11YDR228C PIB2P53191 635 aa1.39□□□□□ -2.19
PCF11YDR228C YGR015CP53208 328 aa1.39□□□□□ -2.19
PCF11YDR228C NDL1Q06568 189 aa1.39□□□□□ -2.19
PCF11YDR228C SRO7Q12038 1033 aa1.39□□□□□ -2.19
PCF11YDR228C HMS1Q12398 434 aa1.39□□□□□ -2.19
PCF11YDR228C HEM4P06174 275 aa1.39□□□□□ -2.19
PCF11YDR228C RNA1P11745 407 aaKnown RBP1.39□□□□□ -2.19
PCF11YDR228C EPT1P22140 391 aa1.39□□□□□ -2.19
PCF11YDR228C ZIP1P31111 875 aa1.39□□□□□ -2.19
PCF11YDR228C RPN12P32496 274 aa1.39□□□□□ -2.19
PCF11YDR228C AST1P35183 429 aa1.39□□□□□ -2.19
PCF11YDR228C DOA1P36037 715 aa1.39□□□□□ -2.19
PCF11YDR228C RRT13P40042 185 aa1.39□□□□□ -2.19
PCF11YDR228C CTK3P46963 296 aaPredicted RBP1.39□□□□□ -2.19
PCF11YDR228C YJR054WP47114 497 aa1.39□□□□□ -2.19
PCF11YDR228C SED5Q01590 340 aa1.39□□□□□ -2.19
PCF11YDR228C MDM1Q01846 1127 aa1.39□□□□□ -2.19
PCF11YDR228C AUS1Q08409 1394 aa1.39□□□□□ -2.19
PCF11YDR228C PDX1P16451 410 aa1.38□□□□□ -2.19
PCF11YDR228C SLM5P25345 492 aaKnown RBP1.38□□□□□ -2.19
PCF11YDR228C NRP1P32770 719 aaKnown RBP RIP-Chip data1.38□□□□□ -2.19not detected
PCF11YDR228C YSC83P32792 385 aa1.38□□□□□ -2.19
PCF11YDR228C FAD1P38913 306 aa1.38□□□□□ -2.19
PCF11YDR228C PAC11P40960 533 aa1.38□□□□□ -2.19
PCF11YDR228C SEC27P41811 889 aaKnown RBP1.38□□□□□ -2.19
PCF11YDR228C YJL144WP47009 104 aa1.38□□□□□ -2.19
PCF11YDR228C BIO3P50277 480 aa1.38□□□□□ -2.19
PCF11YDR228C RNH201P53942 307 aa1.38□□□□□ -2.19
PCF11YDR228C INP2Q03824 705 aa1.38□□□□□ -2.19
PCF11YDR228C FSH2Q05015 223 aa1.38□□□□□ -2.19
PCF11YDR228C CKA2P19454 339 aa1.37□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms