RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TREML2Q5T2D2 321 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 ARMCX5Q6P1M9 558 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 METTL7BQ6UX53 244 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 CLMNQ96JQ2 1002 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 SPATA33Q96N06 139 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 TNPO2O14787 897 aaKnown RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 KIF5CO60282 957 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 CCDC175P0C221 793 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 STAT5BP51692 787 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 SURF1Q15526 300 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 FAM110CQ1W6H9 321 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 HSP90AA4PQ58FG1 418 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 SMYD4Q8IYR2 804 aaPredicted RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 CPLX3Q8WVH0 158 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 INPP4AQ96PE3 977 aaPredicted RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 TCHPQ9BT92 498 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 RGL1Q9NZL6 768 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 ZNF214Q9UL59 606 aaPredicted RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 PSME4Q14997 1843 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 FOCADQ5VW36 1801 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 ECM29Q5VYK3 1845 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 A0A1W2PQC6 194 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 M0QZ92 97 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 LDHAP00338 332 aaKnown RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 PLS3P13797 630 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 ACTR2P61160 394 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 IL17AQ16552 155 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 IFI16Q16666 785 aaKnown RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 MTERF2Q49AM1 385 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 TDRD12Q587J7 1177 aaKnown RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 DCAF17Q5H9S7 520 aaPredicted RBP9.2□□□□□ -0.94
USP54-215ENST00000497106 SPATA20Q8TB22 786 aa9.2□□□□□ -0.94
USP54-215ENST00000497106 GNAT1P11488 350 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 GBP6Q6ZN66 633 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 REEP2Q9BRK0 252 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 TSGA10Q9BZW7 698 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 OLFML3Q9NRN5 406 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 ADAMTS5Q9UNA0 930 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.19□□□□□ -0.94
USP54-215ENST00000497106 ZNF536O15090 1300 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 FRMPD4Q14CM0 1322 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 COL4A5P29400 1685 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 PPP1R3GB7ZBB8 358 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 MAGEB2O15479 319 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 HIP1RO75146 1068 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 EFNA5P52803 228 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 MYBPC2Q14324 1141 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 ANKRD13CQ8N6S4 541 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 KATNAL1Q9BW62 490 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 LGALS16A8MUM7 142 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 SPATA31C2B4DYI2 1134 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 ASAP2O43150 1006 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 OATP04181 439 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 NAP1L1P55209 391 aaKnown RBP9.19□□□□□ -0.94
USP54-215ENST00000497106 MAEAQ7L5Y9 396 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 FRMD5Q7Z6J6 570 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 FAM186BQ8IYM0 893 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 SHISA4Q96DD7 197 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 MKNK1Q9BUB5 465 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 PDCL3Q9H2J4 239 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 BLOC1S4Q9NUP1 217 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 VAV3Q9UKW4 847 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 DIS3Q9Y2L1 958 aaKnown RBP9.19□□□□□ -0.94
USP54-215ENST00000497106 ITIH6Q6UXX5 1313 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 IGLV3-22A0A075B6J6 115 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 AFPP02771 609 aaKnown RBP9.19□□□□□ -0.94
USP54-215ENST00000497106 RINT1Q6NUQ1 792 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 INTS8Q75QN2 995 aaKnown RBP9.19□□□□□ -0.94
USP54-215ENST00000497106 CYFIP1Q7L576 1253 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 RSPH3Q86UC2 560 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 SAMSN1Q9NSI8 373 aaKnown RBP9.19□□□□□ -0.94
USP54-215ENST00000497106 FZD1Q9UP38 647 aa9.19□□□□□ -0.94
USP54-215ENST00000497106 HBP1O60381 514 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 RPLP2P05387 115 aaKnown RBP9.18□□□□□ -0.94
USP54-215ENST00000497106 PRKCEQ02156 737 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 KRT31Q15323 416 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 KYAT1Q16773 422 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 WDR44Q5JSH3 913 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 ZNF592Q92610 1267 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 EDEM3Q9BZQ6 932 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 A0A087X0B3 334 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 LRRIQ4A6NIV6 560 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 PHACTR2O75167 634 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 MXD4Q14582 209 aaPredicted RBP9.18□□□□□ -0.94
USP54-215ENST00000497106 EEPD1Q7L9B9 569 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 HACE1Q8IYU2 909 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 OR8K1Q8NGG5 319 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 PSPC1Q8WXF1 523 aaKnown RBP9.18□□□□□ -0.94
USP54-215ENST00000497106 MYH4Q9Y623 1939 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 SOCS7O14512 581 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 ZNF710Q8N1W2 664 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 KIF18AQ8NI77 898 aa9.18□□□□□ -0.94
USP54-215ENST00000497106 AKR1B10O60218 316 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 KPNA6O60684 536 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 CASP1P29466 404 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 LRRC41Q15345 812 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 ZNF484Q5JVG2 852 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 IQCEQ6IPM2 695 aa9.17□□□□□ -0.94
USP54-215ENST00000497106 ZNF467Q7Z7K2 595 aaPredicted RBP9.17□□□□□ -0.94
USP54-215ENST00000497106 CCDC42Q96M95 316 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms