RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 FOXQ1Q9C009 403 aa17.51■□□□□ 0.39
UFD1-209ENST00000489406 EPC1Q9H2F5 836 aa17.51■□□□□ 0.39
UFD1-209ENST00000489406 PCDHGA2Q9Y5H1 932 aa17.51■□□□□ 0.39
UFD1-209ENST00000489406 GCN1Q92616 2671 aaKnown RBP17.5■□□□□ 0.39
UFD1-209ENST00000489406 LAMTOR5O43504 91 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 SNHG28P0DPA3 235 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 SP4Q02446 784 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 CSTF1Q05048 431 aaKnown RBP17.5■□□□□ 0.39
UFD1-209ENST00000489406 SPEM2Q0P670 501 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 GRIK4Q16099 956 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 TMEM266Q2M3C6 531 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 SEC62Q99442 399 aaKnown RBP17.5■□□□□ 0.39
UFD1-209ENST00000489406 ARHGEF3Q9NR81 526 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 SPATA6Q9NWH7 488 aaPredicted RBP17.5■□□□□ 0.39
UFD1-209ENST00000489406 GMEB2Q9UKD1 530 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 FBXO4Q9UKT5 387 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 ZMIZ1Q9ULJ6 1067 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 TRPV2Q9Y5S1 764 aa17.5■□□□□ 0.39
UFD1-209ENST00000489406 MGEA5O60502 916 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 CXCL14O95715 111 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 FGFR1P11362 822 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 NFX1Q12986 1120 aaKnown RBP17.49■□□□□ 0.39
UFD1-209ENST00000489406 MARCH8Q5T0T0 291 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 N4BP2L1Q5TBK1 243 aaPredicted RBP17.49■□□□□ 0.39
UFD1-209ENST00000489406 METTL7BQ6UX53 244 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 GPR149Q86SP6 731 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 SLC44A3Q8N4M1 653 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 PJA1Q8NG27 643 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 ZNF558Q96NG5 402 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 TOMM22Q9NS69 142 aa17.49■□□□□ 0.39
UFD1-209ENST00000489406 IGSF9BQ9UPX0 1349 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 MBLAC1A4D2B0 266 aaPredicted RBP17.48■□□□□ 0.39
UFD1-209ENST00000489406 ZIC2O95409 532 aaPredicted RBP17.48■□□□□ 0.39
UFD1-209ENST00000489406 SRFP11831 508 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 CCND2P30279 289 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 HSD17B4P51659 736 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 IGBP1P78318 339 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 SHC2P98077 582 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 NEDD9Q14511 834 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 NONOQ15233 471 aaKnown RBP eCLIP17.48■□□□□ 0.39
UFD1-209ENST00000489406 RRP12Q5JTH9 1297 aaKnown RBP17.48■□□□□ 0.39
UFD1-209ENST00000489406 STOX1Q6ZVD7 989 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 CABP7Q86V35 215 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 FTSJ3Q8IY81 847 aaKnown RBP17.48■□□□□ 0.39
UFD1-209ENST00000489406 TMEM87AQ8NBN3 555 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 ZBTB44Q8NCP5 570 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 SPG21Q9NZD8 308 aa17.48■□□□□ 0.39
UFD1-209ENST00000489406 M0QZ92 97 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 OPLAHO14841 1288 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 TBC1D4O60343 1298 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 N4BP1O75113 896 aaKnown RBP17.47■□□□□ 0.39
UFD1-209ENST00000489406 ZFYP08048 801 aaPredicted RBP17.47■□□□□ 0.39
UFD1-209ENST00000489406 MARK3P27448 753 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 HOXA13P31271 388 aaPredicted RBP17.47■□□□□ 0.39
UFD1-209ENST00000489406 PPM1AP35813 382 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 QRICH1Q2TAL8 776 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 GPATCH4Q5T3I0 446 aaKnown RBP17.47■□□□□ 0.39
UFD1-209ENST00000489406 DCLRE1AQ6PJP8 1040 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 LRRC55Q6ZSA7 311 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 ADGRF4Q8IZF3 695 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 ADAM2Q99965 735 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 ATP6V0A4Q9HBG4 840 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 ZSCAN32Q9NX65 697 aa17.47■□□□□ 0.39
UFD1-209ENST00000489406 CNOT1A5YKK6 2376 aaKnown RBP17.47■□□□□ 0.39
UFD1-209ENST00000489406 DOCK5Q9H7D0 1870 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 DENND3A2RUS2 1198 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 SPDYE4A6NLX3 237 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 ORC4O43929 436 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 LILRB5O75023 590 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 RAB11FIP3O75154 756 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 RLBP1P12271 317 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 GBP2P32456 591 aaPredicted RBP17.46■□□□□ 0.39
UFD1-209ENST00000489406 PTPN14Q15678 1187 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 LETM2Q2VYF4 491 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 SLC22A17Q8WUG5 538 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 AUTS2Q8WXX7 1259 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 GLG1Q92896 1179 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 CELF4Q9BZC1 486 aaKnown RBP17.46■□□□□ 0.39
UFD1-209ENST00000489406 RGS18Q9NS28 235 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 LOXHD1Q8IVV2 1947 aa17.46■□□□□ 0.39
UFD1-209ENST00000489406 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.45■□□□□ 0.38
UFD1-209ENST00000489406 C1QTNF9BB2RNN3 333 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 C1QTNF9P0C862 333 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 LPAL2Q16609 132 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 SLC24A5Q71RS6 500 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 BCO2Q9BYV7 579 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 SFXN1Q9H9B4 322 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 VAT1LQ9HCJ6 419 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 TCP11L1Q9NUJ3 509 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 PCDHA1Q9Y5I3 950 aa17.45■□□□□ 0.38
UFD1-209ENST00000489406 C9IYK1 514 aa17.44■□□□□ 0.38
UFD1-209ENST00000489406 DHX16O60231 1041 aaKnown RBP17.44■□□□□ 0.38
UFD1-209ENST00000489406 GNPTABQ3T906 1256 aa17.44■□□□□ 0.38
UFD1-209ENST00000489406 LRSAM1Q6UWE0 723 aa17.44■□□□□ 0.38
UFD1-209ENST00000489406 C1orf112Q9NSG2 853 aa17.44■□□□□ 0.38
UFD1-209ENST00000489406 SPATA31C2B4DYI2 1134 aa17.43■□□□□ 0.38
UFD1-209ENST00000489406 GDF9O60383 454 aa17.43■□□□□ 0.38
UFD1-209ENST00000489406 RPLP2P05387 115 aaKnown RBP17.43■□□□□ 0.38
UFD1-209ENST00000489406 TCF7P36402 384 aaPredicted RBP17.43■□□□□ 0.38
UFD1-209ENST00000489406 SEMA3FQ13275 785 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms