RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 PKD2L1Q9P0L9 805 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 CNOT8Q9UFF9 292 aaKnown RBP14.11□□□□□ -0.15
PTPRN-202ENST00000409251 CHD4Q14839 1912 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 KRT18P05783 430 aaKnown RBP14.11□□□□□ -0.15
PTPRN-202ENST00000409251 MMEP08473 750 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 PLTPP55058 493 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 ICA1Q05084 483 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 CCDC174Q6PII3 467 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 CCDC197Q8NCU1 140 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 SPATA20Q8TB22 786 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 ADAM33Q9BZ11 813 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 HMGB1P1B2RPK0 211 aaPredicted RBP14.11□□□□□ -0.15
PTPRN-202ENST00000409251 STXBP3O00186 592 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 EVI5O60447 810 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 CLSTN1O94985 981 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 EGFRP00533 1210 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 SLC8A1P32418 973 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 PCK1P35558 622 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 DLK2Q6UY11 383 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 CABP7Q86V35 215 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 IRAK4Q9NWZ3 460 aa14.11□□□□□ -0.15
PTPRN-202ENST00000409251 POTEMA6NI47 508 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 PPP1R12AO14974 1030 aaPredicted RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 TTLL1O95922 423 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 ITGA4P13612 1032 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 SLC9C1Q4G0N8 1177 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 CAPRIN2Q6IMN6 1127 aaKnown RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 SPDYE1Q8NFV5 336 aaPredicted RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 NUP58Q9BVL2 599 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 TTI1O43156 1089 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 PPP2R2AP63151 447 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 ZNF211Q13398 564 aaPredicted RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 DLGAP5Q15398 846 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 DCAF17Q5H9S7 520 aaPredicted RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 PDXDC2PQ6P474 469 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 FAM228AQ86W67 206 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 FAM114A1Q8IWE2 563 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 GLIS3Q8NEA6 775 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 LRRC4CQ9HCJ2 640 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 BCORQ6W2J9 1755 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 PALM3A6NDB9 673 aaPredicted RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 ERVK-9P63128 1117 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 SLFN13Q68D06 897 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 MSL3Q8N5Y2 521 aaKnown RBP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 ACER1Q8TDN7 264 aa14.1□□□□□ -0.15
PTPRN-202ENST00000409251 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.1□□□□□ -0.15
PTPRN-202ENST00000409251 GNAQP50148 359 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SKOR1P84550 965 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 ITGB3BPQ13352 177 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 RRP1BQ14684 758 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 KLHDC7AQ5VTJ3 777 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SPATS2Q86XZ4 545 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 REXO1Q8N1G1 1221 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 KLHL29Q96CT2 875 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 LUC7LQ9NQ29 371 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 HOMER2Q9NSB8 354 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 TRIM33Q9UPN9 1127 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SCN7AQ01118 1682 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 KLRG2A4D1S0 409 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 FOXO6A8MYZ6 492 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SART1O43290 800 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 PCP11498 1178 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 CALML3P27482 149 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 RUFY4Q6ZNE9 571 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 IQCKQ8N0W5 287 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 ARMC2Q8NEN0 867 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 C6orf50Q9HD87 102 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 BARHL2Q9NY43 387 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 TMOD2Q9NZR1 351 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 GAKO14976 1311 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 CCDC189A1A4V9 331 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 BICDL2A1A5D9 508 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 BMP15O95972 392 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 KCNJ2P63252 427 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 ATP2C1P98194 919 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 TBC1D10BQ4KMP7 808 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SFMBT2Q5VUG0 894 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SAMD7Q7Z3H4 446 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SH3RF1Q7Z6J0 888 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 RETREG2Q8NC44 543 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 LMBR1Q8WVP7 490 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 FAXDC2Q96IV6 333 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 PRMT1Q99873 361 aaKnown RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 GLIS2Q9BZE0 524 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 CHORDC1Q9UHD1 332 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 PTPN22Q9Y2R2 807 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 ASTN2O75129 1339 aaPredicted RBP14.09□□□□□ -0.15
PTPRN-202ENST00000409251 DUOX1Q9NRD9 1551 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SBF2Q86WG5 1849 aa14.09□□□□□ -0.15
PTPRN-202ENST00000409251 SPDYE3A6NKU9 549 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 RASSF9O75901 435 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 ATP6V1G2O95670 118 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 ABCB5Q2M3G0 1257 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 SPIRE2Q8WWL2 714 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 LRRC45Q96CN5 670 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 SAAL1Q96ER3 474 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 INTS9Q9NV88 658 aaKnown RBP14.08□□□□□ -0.15
PTPRN-202ENST00000409251 PANK4Q9NVE7 773 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 TBK1Q9UHD2 729 aa14.08□□□□□ -0.15
PTPRN-202ENST00000409251 TAF1LQ8IZX4 1826 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms