RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 TELO2Q9Y4R8 837 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 MCM3APO60318 1980 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 ANO9A1A5B4 782 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 ANKRD65E5RJM6 399 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 MEIS1O00470 390 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 ZBTB39O15060 712 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 IPO7O95373 1038 aaKnown RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 FCER1AP12319 257 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 C2orf54Q08AI8 447 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 LBX2Q6XYB7 198 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 RETREG2Q8NC44 543 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 CAGE1Q8TC20 777 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 SNX29Q8TEQ0 813 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 SMCR8Q8TEV9 937 aaPredicted RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 P2RX5Q93086 422 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 TRIM9Q9C026 710 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 ASCC2Q9H1I8 757 aaPredicted RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 A1CFQ9NQ94 594 aaKnown RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 POTEB3A0JP26 581 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 E9PMD0 336 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 PSMD10O75832 226 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 CCNE1P24864 410 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 HOXA7P31268 230 aaPredicted RBP9.46□□□□□ -0.89
TRIM55-204ENST00000353317 NF2P35240 595 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 KIF5AQ12840 1032 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 PGM5Q15124 567 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 TMEM119Q4V9L6 283 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 CEP55Q53EZ4 464 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 POTEBQ6S5H4 581 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 RNF207Q6ZRF8 634 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 CATSPER3Q86XQ3 398 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 CREG2Q8IUH2 290 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 GOLGA6L1Q8N7Z2 621 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 NOC3LQ8WTT2 800 aaKnown RBP9.46□□□□□ -0.89
TRIM55-204ENST00000353317 SECISBP2LQ93073 1101 aaKnown RBP9.46□□□□□ -0.89
TRIM55-204ENST00000353317 PCMTD1Q96MG8 357 aaPredicted RBP9.46□□□□□ -0.89
TRIM55-204ENST00000353317 NOC4LQ9BVI4 516 aaKnown RBP9.46□□□□□ -0.89
TRIM55-204ENST00000353317 HOXC10Q9NYD6 342 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 PKD2L1Q9P0L9 805 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 CAPN6Q9Y6Q1 641 aa9.46□□□□□ -0.89
TRIM55-204ENST00000353317 MYMKA6NI61 221 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 ATP2A1O14983 1001 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 DHX15O43143 795 aaKnown RBP9.46□□□□□ -0.9
TRIM55-204ENST00000353317 ATP9AO75110 1047 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 RGS20O76081 388 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 ITGBL1O95965 494 aaPredicted RBP9.46□□□□□ -0.9
TRIM55-204ENST00000353317 ZNF76P36508 570 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 VAV2P52735 878 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 CNTN2Q02246 1040 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 PDE4DQ08499 809 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 PPIL2Q13356 520 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 OTOP1Q7RTM1 612 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 HDAC7Q8WUI4 952 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 MS4A4AQ96JQ5 239 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 CYP39A1Q9NYL5 469 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 RGL1Q9NZL6 768 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 WRAP73Q9P2S5 460 aaPredicted RBP9.46□□□□□ -0.9
TRIM55-204ENST00000353317 RBPJLQ9UBG7 517 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 DOCK3Q8IZD9 2030 aa9.46□□□□□ -0.9
TRIM55-204ENST00000353317 POTEFA5A3E0 1075 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 CXCL11O14625 94 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 MTIF2P46199 727 aaKnown RBP9.45□□□□□ -0.9
TRIM55-204ENST00000353317 CDK17Q00537 523 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 SEMA3FQ13275 785 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 ITGB3BPQ13352 177 aaPredicted RBP9.45□□□□□ -0.9
TRIM55-204ENST00000353317 POTEGQ6S5H5 508 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 ARMC9Q7Z3E5 817 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 CCDC42Q96M95 316 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 ERGIC2Q96RQ1 377 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 RMDN3Q96TC7 470 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 MXRA8Q9BRK3 442 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 PDCD2LQ9BRP1 358 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 CRACR2AQ9BSW2 395 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 TEX13BQ9BXU2 312 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 POLD4Q9HCU8 107 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 PXMP2Q9NR77 195 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 KCNH7Q9NS40 1196 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 ARHGAP20Q9P2F6 1191 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 SNX12Q9UMY4 172 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 KIAA1024Q9UPX6 916 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 FRMPD4Q14CM0 1322 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 NPHP3-ACAD11A0A0J9YXS1 232 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 A0A1W2PQJ5 194 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 BICDL2A1A5D9 508 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 EPHB6O15197 1021 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 MARCH6O60337 910 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 PPFIA4O75335 1185 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 CYP2C8P10632 490 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 CYP4A11Q02928 519 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 TRAF1Q13077 416 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 SKIDA1Q1XH10 827 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 TMEM266Q2M3C6 531 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 FIGNQ5HY92 759 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 MCTP2Q6DN12 878 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 B3GNT9Q6UX72 402 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 PROCA1Q8NCQ7 364 aaPredicted RBP9.45□□□□□ -0.9
TRIM55-204ENST00000353317 GLIS3Q8NEA6 775 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 AENQ8WTP8 325 aaKnown RBP9.45□□□□□ -0.9
TRIM55-204ENST00000353317 SLC5A5Q92911 643 aa9.45□□□□□ -0.9
TRIM55-204ENST00000353317 LRRC1Q9BTT6 524 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms