RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ZNF131P52739 623 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 GRIN1Q05586 938 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 NFIAQ12857 509 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 LRRC41Q15345 812 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 PBKQ96KB5 322 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 FEM1BQ9UK73 627 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 RAB21Q9UL25 225 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 DAAM1Q9Y4D1 1078 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 COL1A1P02452 1464 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 PALMO75781 387 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 SERPING1P05155 500 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 SLC16A2P36021 539 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 CXCL9Q07325 125 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 BIRC3Q13489 604 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 TBC1D1Q86TI0 1168 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 PPP1R14CQ8TAE6 165 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 RAB3IPQ96QF0 476 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 YY1AP1Q9H869 796 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 PANK4Q9NVE7 773 aa12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 GEMIN8Q9NWZ8 242 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 CNOT7Q9UIV1 285 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 BZW2Q9Y6E2 419 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 CHMP2AO43633 222 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 RASSF2P50749 326 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 PLTPP55058 493 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 FYB2Q5VWT5 728 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 FAM133AQ8N9E0 248 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 MCUR1Q96AQ8 359 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 AP1M1Q9BXS5 423 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 RIC8AQ9NPQ8 531 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 PKD2L1Q9P0L9 805 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ZBTB12Q9Y330 459 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 LAMB2P55268 1798 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 CFBP00751 764 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ELOA2Q8IYF1 753 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ADGRF4Q8IZF3 695 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 EPN3Q9H201 632 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 IL17RBQ9NRM6 502 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 DDX25Q9UHL0 483 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 PCDHA12Q9UN75 941 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 DPYDQ12882 1025 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 SEMA3FQ13275 785 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 GPBP1Q86WP2 473 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ZNF384Q8TF68 577 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 CCT8L2Q96SF2 557 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 FMO2Q99518 471 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ZMYND12Q9H0C1 365 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 CCDC160A6NGH7 325 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 LRRC53A6NM62 1247 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 MAP2K7O14733 419 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 KRT14P02533 472 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 EIF3BP55884 814 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ATP2C1P98194 919 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 ARHGAP44Q17R89 818 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 USP37Q86T82 979 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 MICALL2Q8IY33 904 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 MRRFQ96E11 262 aaKnown RBP12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 DNM3Q9UQ16 869 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 COL4A3BPQ9Y5P4 624 aa12.51□□□□□ -0.41
CLSTN3-201ENST00000266546 RASA3Q14644 834 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 EXOC3L4Q17RC7 722 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 FOXR1Q6PIV2 292 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 ILDR1Q86SU0 546 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 PACS2Q86VP3 889 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 PARP9Q8IXQ6 854 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 RUBCNQ92622 972 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 FAM196BA6NMK8 535 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 GCNT3O95395 438 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 KRT15P19012 456 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 LSP1P33241 339 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 SHMT1P34896 483 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 RBBP5Q15291 538 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 MUM1Q2TAK8 710 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 TBC1D10BQ4KMP7 808 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 MIGA2Q7L4E1 593 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 DDX4Q9NQI0 724 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 STXBP3O00186 592 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 GAS8O95995 478 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 ERVK-24P63145 666 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 GFPT1Q06210 699 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 HHATQ5VTY9 493 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 NEK9Q8TD19 979 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 ZNF473Q8WTR7 871 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 HVCN1Q96D96 273 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 SLC24A3Q9HC58 644 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 ZBTB21Q9ULJ3 1066 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 LY75O60449 1722 aa12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 DDX60Q8IY21 1712 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-201ENST00000266546 CCDC188H7C350 402 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 TULP2O00295 520 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 MDH1P40925 334 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 MAGOHP61326 146 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 LPAR1Q92633 364 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 MAGOHBQ96A72 148 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 RUNDC3BQ96NL0 473 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 AGPAT5Q9NUQ2 364 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 MYO1FO00160 1098 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 DKC1O60832 514 aaKnown RBP eCLIP12.49□□□□□ -0.414e-8■■■■□ 20.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms