RNA–Protein interactions for RNA: YDR439W

LRS4, Transcript of Nucleolar protein that forms a complex with Csm1p, yeast

Gene LRS4, Length 1,044 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LRS4	YDR439W	PUT3	P25502	979 aa	Predicted RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	NDC1	P32500	655 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	PMU1	P36069	295 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	YBL028C	P38202	106 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	SWC5	P38326	303 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	ALG8	P40351	577 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	CDC40	P40968	455 aa	Predicted RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	LAM5	P43560	674 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	TOS3	P43637	560 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	YGL082W	P53155	381 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	HXT11	P54862	567 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	TIM11	P81449	96 aa	Predicted RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	YDR415C	Q04033	374 aa	Predicted RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	RSA1	Q08932	381 aa		3.15	□□□□□ -1.91
LRS4	YDR439W	PFK27	Q12471	397 aa	Predicted RBP	3.15	□□□□□ -1.91
LRS4	YDR439W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
LRS4	YDR439W	MAS2	P11914	482 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	PTR2	P32901	601 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	RPT5	P33297	434 aa	Known RBP	3.14	□□□□□ -1.91
LRS4	YDR439W	KKQ8	P36004	724 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	YBR056W	P38081	501 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	YHR131C	P38835	850 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	FAA2	P39518	744 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	PRP39	P39682	629 aa	Known RBP	3.14	□□□□□ -1.91
LRS4	YDR439W	JLP2	P40206	208 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	ATM1	P40416	690 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	LYS12	P40495	371 aa	Known RBP	3.14	□□□□□ -1.91
LRS4	YDR439W	SFH5	P47008	294 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	YHC3	P47040	408 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	RTT101	P47050	842 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	YGL114W	P53134	725 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	PNC1	P53184	216 aa	Known RBP	3.14	□□□□□ -1.91
LRS4	YDR439W	YGR117C	P53270	476 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	SPO19	Q03029	223 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	PIR3	Q03180	325 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	CAB5	Q03941	241 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	BCH1	Q05029	724 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	ERP1	Q05359	219 aa	Known RBP	3.14	□□□□□ -1.91
LRS4	YDR439W	GAT3	Q07928	141 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	TPT1	Q12272	230 aa	Known RBP	3.14	□□□□□ -1.91
LRS4	YDR439W	YDR262W	Q12331	272 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	NCA2	Q12374	616 aa		3.14	□□□□□ -1.91
LRS4	YDR439W	TPK3	P05986	398 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	ATR1	P13090	542 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	CAP2	P13517	287 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	EXG1	P23776	448 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	MXR2	P25566	168 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	YPS1	P32329	569 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	YEF1	P32622	495 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	MRPS5	P33759	307 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	YNK1	P36010	153 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	GPX2	P38143	162 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	MIX23	P38162	196 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	PEX32	P38292	413 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	RRP3	P38712	501 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	ATG7	P38862	630 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	SNL1	P40548	159 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	OST1	P41543	476 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	COS10	P52924	374 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	YGL185C	P53100	379 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	EGD1	Q02642	157 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	SMP3	Q04174	516 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	YLR297W	Q05899	129 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	VAC14	Q06708	880 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	RAX1	Q08760	435 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	YOP1	Q12402	180 aa		3.13	□□□□□ -1.91
LRS4	YDR439W	PAA1	Q12447	191 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	MRPL23	Q12487	163 aa	Predicted RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	RRP12	Q12754	1228 aa	Known RBP	3.13	□□□□□ -1.91
LRS4	YDR439W	SUP35	P05453	685 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	ATP1	P07251	545 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	GDH1	P07262	454 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	GAL7	P08431	366 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	RPL20A	P0CX23	172 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	RPL20B	P0CX24	172 aa	Predicted RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	MTF1	P14908	341 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	SLY1	P22213	666 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	YCL068C	P25593	260 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	PHA2	P32452	334 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	TRS65	P32893	560 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	BUD2	P33314	1104 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	SKT5	P34226	696 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	DOA1	P36037	715 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	MCR1	P36060	302 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	VPS45	P38932	577 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	YMR134W	P40207	237 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	SSN8	P47821	323 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	YNL146W	P53906	100 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	YMR181C	Q03231	154 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	ERV41	Q04651	352 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	RRG8	Q06109	277 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	KAP95	Q06142	861 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	YLH47	Q06493	454 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	ARR1	Q06596	294 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	YLR413W	Q06689	675 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	YPL199C	Q08954	240 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	THP3	Q12049	470 aa	Known RBP	3.12	□□□□□ -1.91
LRS4	YDR439W	LDB17	Q12342	491 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	POM152	P39685	1337 aa		3.12	□□□□□ -1.91
LRS4	YDR439W	RAD1	P06777	1100 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms