RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	RPC40	P07703	335 aa	Known RBP	4.82	□□□□□ -1.64
SCM3	YDL139C	MAK5	P38112	773 aa	Predicted RBP	4.82	□□□□□ -1.64
SCM3	YDL139C	ARA1	P38115	344 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	EHT1	P38295	451 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	FAA2	P39518	744 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	AYR1	P40471	297 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	IAH1	P41734	238 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	DIM1	P41819	318 aa	Known RBP	4.82	□□□□□ -1.64
SCM3	YDL139C	CIS3	P47001	227 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	YJR030C	P47101	745 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	UPF3	P48412	387 aa	Known RBP	4.82	□□□□□ -1.64
SCM3	YDL139C	NHP10	Q03435	203 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	GIS1	Q03833	894 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	YDR179W-A	Q03983	463 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	VTA1	Q06263	330 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	LOT6	Q07923	191 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	RRP36	Q12481	300 aa	Predicted RBP	4.82	□□□□□ -1.64
SCM3	YDL139C	YCL012C	Q8J0M4	134 aa		4.82	□□□□□ -1.64
SCM3	YDL139C	MRP13	P12686	339 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	URA4	P20051	364 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	PRP28	P23394	588 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	CLB4	P24871	460 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	SLM5	P25345	492 aa	Known RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	CSM1	P25651	190 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	ARP2	P32381	391 aa	Known RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	MSS1	P32559	526 aa	Predicted RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	TIF3	P34167	436 aa	Known RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	KKQ8	P36004	724 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	BMT2	P38278	337 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	YPT35	P38815	214 aa	Known RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	APE4	P38821	490 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	PFS1	P38872	237 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	GGC1	P38988	300 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	AVT6	P40074	448 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	CAB2	P40506	365 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	SNL1	P40548	159 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	CCT7	P42943	550 aa	Known RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	HMS2	P47175	358 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	YJR149W	P47177	404 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	GTO1	P48239	356 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	KEL2	P50090	882 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	YNR071C	P53757	342 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	MOT3	P54785	490 aa	Known RBP	4.81	□□□□□ -1.64
SCM3	YDL139C	FDC1	Q03034	503 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	HLR1	Q04429	423 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	GGA1	Q06336	557 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
SCM3	YDL139C	MUM3	Q08750	479 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	VPS68	Q12016	184 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	RPN6	Q12377	434 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	YPL119C-A	Q3E751	87 aa		4.81	□□□□□ -1.64
SCM3	YDL139C	YPR096C	O13587	100 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	URA3	P03962	267 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	RAD7	P06779	565 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	CPA1	P07258	411 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	BCY1	P07278	416 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	ATR1	P13090	542 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	THR1	P17423	357 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	CWH43	P25618	953 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	CRM1	P30822	1084 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	SDS22	P36047	338 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	TUL1	P36096	758 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	PIM1	P36775	1133 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	RIB1	P38066	345 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	DED81	P38707	554 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	IES5	P40060	125 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	TIF34	P40217	347 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	PRE6	P40303	254 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	GVP36	P40531	326 aa	Known RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	GAB1	P41733	394 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	ELP2	P42935	788 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	CAK1	P43568	368 aa	Predicted RBP	4.8	□□□□□ -1.64
SCM3	YDL139C	AIM22	P47051	409 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	YJL043W	P47053	257 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	COS12	P53053	380 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	MPS2	P53159	387 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	SNF12	P53628	566 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	ECM11	Q04110	302 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	YML096W	Q04489	525 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	BCH1	Q05029	724 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	DCI1	Q08558	271 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	ULA1	Q12059	462 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	RUP1	Q12242	671 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	SUL2	Q12325	893 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	SRN2	Q99176	213 aa		4.8	□□□□□ -1.64
SCM3	YDL139C	SEM1	O94742	89 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	RHB1	P25378	209 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	POL4	P25615	582 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	CDC5	P32562	705 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	TCD2	P36101	447 aa	Known RBP	4.79	□□□□□ -1.64
SCM3	YDL139C	AIM2	P39721	246 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	OSW5	P40219	148 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	RIC1	P40395	1056 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	AGP3	P43548	558 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	EFR3	Q03653	782 aa	Known RBP	4.79	□□□□□ -1.64
SCM3	YDL139C	GMC2	Q06201	188 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	UAF30	Q08747	228 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	USV1	Q12132	391 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	NSL1	Q12143	216 aa		4.79	□□□□□ -1.64
SCM3	YDL139C	ATG34	Q12292	412 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms