RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	APN1	P22936	367 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	CNA1	P23287	553 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	MRPL15	P36523	253 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	EGD2	P38879	174 aa	Known RBP	13.12	□□□□□ -0.31
DEP1	YAL013W	IMD4	P50094	524 aa	Known RBP	13.12	□□□□□ -0.31
DEP1	YAL013W	ROM1	P53046	1155 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	SMA2	Q04658	369 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	YOL036W	Q08206	761 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	MHF1	Q3E835	90 aa		13.12	□□□□□ -0.31
DEP1	YAL013W	URE2	P23202	354 aa	Known RBP	13.11	□□□□□ -0.31
DEP1	YAL013W	MXR2	P25566	168 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	RPS27A	P35997	82 aa	Known RBP	13.11	□□□□□ -0.31
DEP1	YAL013W	RPS27B	P38711	82 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	TRR2	P38816	342 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	MSS2	P40990	351 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	ALK1	P43633	760 aa	Known RBP	13.11	□□□□□ -0.31
DEP1	YAL013W	TMA20	P89886	181 aa	Predicted RBP	13.11	□□□□□ -0.31
DEP1	YAL013W	TPS1	Q00764	495 aa	Known RBP	13.11	□□□□□ -0.31
DEP1	YAL013W	RSN1	Q03516	953 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	YDR179W-A	Q03983	463 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	YPR091C	Q06833	770 aa		13.11	□□□□□ -0.31
DEP1	YAL013W	GAL4	P04386	881 aa		13.1	□□□□□ -0.31
DEP1	YAL013W	SIR3	P06701	978 aa		13.1	□□□□□ -0.31
DEP1	YAL013W	RPC40	P07703	335 aa	Known RBP	13.1	□□□□□ -0.31
DEP1	YAL013W	MRPL32	P25348	183 aa		13.1	□□□□□ -0.31
DEP1	YAL013W	CMK1	P27466	446 aa	Known RBP	13.1	□□□□□ -0.31
DEP1	YAL013W	SOP4	P39543	234 aa	Predicted RBP	13.1	□□□□□ -0.31
DEP1	YAL013W	RNH70	P53331	553 aa		13.1	□□□□□ -0.31
DEP1	YAL013W	CTL1	Q03220	320 aa	Known RBP	13.1	□□□□□ -0.31
DEP1	YAL013W	IRA2	P19158	3079 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	MCK1	P21965	375 aa	Known RBP	13.09	□□□□□ -0.31
DEP1	YAL013W	RPL5	P26321	297 aa	Known RBP	13.09	□□□□□ -0.31
DEP1	YAL013W	PRP21	P32524	280 aa	Predicted RBP	13.09	□□□□□ -0.31
DEP1	YAL013W	TAF14	P35189	244 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	FMP52	P40008	231 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	MET28	P40573	187 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	MON1	P53129	644 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	SLD3	P53135	668 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	MPC1	P53157	130 aa	Known RBP	13.09	□□□□□ -0.31
DEP1	YAL013W	YGR266W	P53326	701 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	SNF12	P53628	566 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	TLG1	Q03322	224 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	NAT4	Q04751	285 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	YPR172W	Q06608	200 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	YOR365C	Q08844	703 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	GLE1	Q12315	538 aa		13.09	□□□□□ -0.31
DEP1	YAL013W	RPS21B	Q3E754	87 aa	Known RBP	13.09	□□□□□ -0.31
DEP1	YAL013W	FAS1	P07149	2051 aa	Known RBP	13.09	□□□□□ -0.31
DEP1	YAL013W	MOD5	P07884	428 aa		13.08	□□□□□ -0.32
DEP1	YAL013W	YOR062C	P36025	268 aa		13.08	□□□□□ -0.32
DEP1	YAL013W	YBR138C	P38277	524 aa		13.08	□□□□□ -0.32
DEP1	YAL013W	TAT2	P38967	592 aa		13.08	□□□□□ -0.32
DEP1	YAL013W	ISC1	P40015	477 aa	Known RBP	13.08	□□□□□ -0.32
DEP1	YAL013W	NUP57	P48837	541 aa		13.08	□□□□□ -0.32
DEP1	YAL013W	ACC1	Q00955	2233 aa	Known RBP	13.08	□□□□□ -0.32
DEP1	YAL013W	HO	P09932	586 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	YOL163W	P0CF20	169 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	PZF1	P39933	429 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	AVT6	P40074	448 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	GID8	P40208	455 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	SPG5	P42933	373 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	SYF2	P53277	215 aa	Predicted RBP	13.07	□□□□□ -0.32
DEP1	YAL013W	YPR174C	Q06616	221 aa	Predicted RBP	13.07	□□□□□ -0.32
DEP1	YAL013W	VPS36	Q06696	566 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	GUP2	Q08929	609 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	PIN2	Q12057	282 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	MED11	Q99278	115 aa		13.07	□□□□□ -0.32
DEP1	YAL013W	TFS1	P14306	219 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	TAL1	P15019	335 aa	Known RBP	13.06	□□□□□ -0.32
DEP1	YAL013W	YCK1	P23291	538 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	STP22	P25604	385 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	FES1	P38260	290 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	YLF2	P38746	405 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	YEL068C	P39977	110 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	ICE2	P40499	491 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	MAL11	P53048	616 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	TPC1	P53257	314 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	MEP3	P53390	489 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	NAM8	Q00539	523 aa	Known RBP	13.06	□□□□□ -0.32
DEP1	YAL013W	YDR541C	Q03049	344 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	SIZ1	Q04195	904 aa		13.06	□□□□□ -0.32
DEP1	YAL013W	ASF2	P32448	525 aa	Predicted RBP	13.05	□□□□□ -0.32
DEP1	YAL013W	KAP122	P32767	1081 aa		13.05	□□□□□ -0.32
DEP1	YAL013W	ANS1	P38832	159 aa		13.05	□□□□□ -0.32
DEP1	YAL013W	AST2	P39945	430 aa	Known RBP	13.05	□□□□□ -0.32
DEP1	YAL013W	UTP25	P40498	721 aa	Known RBP	13.05	□□□□□ -0.32
DEP1	YAL013W	YGR168C	P53293	376 aa		13.05	□□□□□ -0.32
DEP1	YAL013W	YLR345W	Q06137	509 aa		13.05	□□□□□ -0.32
DEP1	YAL013W	YDL211C	Q12121	372 aa		13.05	□□□□□ -0.32
DEP1	YAL013W	PST2	Q12335	198 aa	Known RBP	13.05	□□□□□ -0.32
DEP1	YAL013W	PRP19	P32523	503 aa	Known RBP	13.04	□□□□□ -0.32
DEP1	YAL013W	YKR015C	P36111	568 aa		13.04	□□□□□ -0.32
DEP1	YAL013W	BET3	P36149	193 aa		13.04	□□□□□ -0.32
DEP1	YAL013W	YHR097C	P38809	366 aa	Known RBP	13.04	□□□□□ -0.32
DEP1	YAL013W	CTF8	P38877	133 aa		13.04	□□□□□ -0.32
DEP1	YAL013W	IPT1	P38954	527 aa		13.04	□□□□□ -0.32
DEP1	YAL013W	ALP1	P38971	573 aa		13.04	□□□□□ -0.32
DEP1	YAL013W	ALB1	P47019	175 aa	Predicted RBP	13.04	□□□□□ -0.32
DEP1	YAL013W	HMS2	P47175	358 aa		13.04	□□□□□ -0.32
DEP1	YAL013W	TOS2	P50078	622 aa		13.04	□□□□□ -0.32

Retrieved 100 of 5,963 RNA–protein pairs in 39.6 ms