RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 FAM49AQ9H0Q0 323 aaPredicted RBP16.85■□□□□ 0.29
CLN3-249ENST00000636685 TMX1Q9H3N1 280 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 KAT14Q9H8E8 782 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 MAP3K20Q9NYL2 800 aaKnown RBP16.85■□□□□ 0.29
CLN3-249ENST00000636685 RTEL1Q9NZ71 1219 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 R4GN57 208 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 NEDD4P46934 1319 aa16.85■□□□□ 0.29
CLN3-249ENST00000636685 MBLAC1A4D2B0 266 aaPredicted RBP16.84■□□□□ 0.29
CLN3-249ENST00000636685 PARP1P09874 1014 aaKnown RBP16.84■□□□□ 0.29
CLN3-249ENST00000636685 MARK3P27448 753 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 PAK2Q13177 524 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 TPRNQ4KMQ1 711 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 FAM102BQ5T8I3 360 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 CES5AQ6NT32 575 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 TDRD5Q8NAT2 981 aaKnown RBP16.84■□□□□ 0.29
CLN3-249ENST00000636685 NECTIN4Q96NY8 510 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 INPP4AQ96PE3 977 aaPredicted RBP16.84■□□□□ 0.29
CLN3-249ENST00000636685 TCF25Q9BQ70 676 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 ADAM7Q9H2U9 754 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 DCTPP1Q9H773 170 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 ENTPD7Q9NQZ7 604 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 TYW1Q9NV66 732 aaKnown RBP16.84■□□□□ 0.29
CLN3-249ENST00000636685 DLL3Q9NYJ7 618 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 PCDHB7Q9Y5E2 793 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 PCDHA1Q9Y5I3 950 aa16.84■□□□□ 0.29
CLN3-249ENST00000636685 TRIM6-TRIM34B2RNG4 842 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 GCOM1H8Y6P7 765 aaPredicted RBP16.83■□□□□ 0.28
CLN3-249ENST00000636685 POLR2MP0CAP2 368 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 SARSP49591 514 aaKnown RBP16.83■□□□□ 0.28
CLN3-249ENST00000636685 IGBP1P78318 339 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 FANCMQ8IYD8 2048 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 ZDHHC14Q8IZN3 488 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 STAG2Q8N3U4 1231 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 CYP2W1Q8TAV3 490 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 MRPS27Q92552 414 aaKnown RBP16.83■□□□□ 0.28
CLN3-249ENST00000636685 CASP10Q92851 521 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 HINFPQ9BQA5 517 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 SEMA4AQ9H3S1 761 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 TRPV2Q9Y5S1 764 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 SQORQ9Y6N5 450 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 CFAP47Q6ZTR5 3102 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 BAHCC1Q9P281 2608 aa16.83■□□□□ 0.28
CLN3-249ENST00000636685 FIBPO43427 364 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 TCF7P36402 384 aaPredicted RBP16.82■□□□□ 0.28
CLN3-249ENST00000636685 MTHFRP42898 656 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 ITIH3Q06033 890 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 TMEM266Q2M3C6 531 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 IER5Q5VY09 327 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 DCLK2Q8N568 766 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 ESR2Q92731 530 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 RTP3Q9BQQ7 232 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 CHMP4BQ9H444 224 aaKnown RBP16.82■□□□□ 0.28
CLN3-249ENST00000636685 CWH43Q9H720 699 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 HELLSQ9NRZ9 838 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 LZTS1Q9Y250 596 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 CHD6Q8TD26 2715 aa16.82■□□□□ 0.28
CLN3-249ENST00000636685 GPR179Q6PRD1 2367 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 IGSF9BQ9UPX0 1349 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 CCER2I3L3R5 266 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 MGEA5O60502 916 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 PCP11498 1178 aaKnown RBP16.81■□□□□ 0.28
CLN3-249ENST00000636685 RSPO4Q2I0M5 234 aaPredicted RBP16.81■□□□□ 0.28
CLN3-249ENST00000636685 RARS2Q5T160 578 aaKnown RBP16.81■□□□□ 0.28
CLN3-249ENST00000636685 KANK3Q6NY19 840 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 SAMD3Q8N6K7 520 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 C12orf76Q8N812 135 aaPredicted RBP16.81■□□□□ 0.28
CLN3-249ENST00000636685 MTMR8Q96EF0 704 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 FAM227BQ96M60 508 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 ERVK-5Q9HDB9 667 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 NGRNQ9NPE2 291 aaKnown RBP16.81■□□□□ 0.28
CLN3-249ENST00000636685 PUF60Q9UHX1 559 aaKnown RBP16.81■□□□□ 0.28
CLN3-249ENST00000636685 HCFC2Q9Y5Z7 792 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 DENND4AQ7Z401 1863 aa16.81■□□□□ 0.28
CLN3-249ENST00000636685 ZMYM6O95789 1325 aa16.8■□□□□ 0.28
CLN3-249ENST00000636685 A0A0D9SFI3 127 aa16.8■□□□□ 0.28
CLN3-249ENST00000636685 ZBTB5O15062 677 aa16.8■□□□□ 0.28
CLN3-249ENST00000636685 PLCB3Q01970 1234 aa16.8■□□□□ 0.28
CLN3-249ENST00000636685 NFX1Q12986 1120 aaKnown RBP16.8■□□□□ 0.28
CLN3-249ENST00000636685 SIX5Q8N196 739 aa16.8■□□□□ 0.28
CLN3-249ENST00000636685 RIN2Q8WYP3 895 aaPredicted RBP16.8■□□□□ 0.28
CLN3-249ENST00000636685 RNF41Q9H4P4 317 aaPredicted RBP16.8■□□□□ 0.28
CLN3-249ENST00000636685 CHD8Q9HCK8 2581 aa16.8■□□□□ 0.28
CLN3-249ENST00000636685 FRMPD4Q14CM0 1322 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 GSTTP1A0A1W2PQM5 241 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 M0QZ92 97 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 STAM2O75886 525 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 LAG3P18627 525 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 TMC7Q7Z402 723 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 ZNF589Q86UQ0 364 aaPredicted RBP16.79■□□□□ 0.28
CLN3-249ENST00000636685 IQCA1Q86XH1 822 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 HOMER1Q86YM7 354 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 PLCD3Q8N3E9 789 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 ENAHQ8N8S7 591 aaPredicted RBP16.79■□□□□ 0.28
CLN3-249ENST00000636685 FEZF2Q8TBJ5 459 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 SENP7Q9BQF6 1050 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 CELF4Q9BZC1 486 aaKnown RBP16.79■□□□□ 0.28
CLN3-249ENST00000636685 ERAP1Q9NZ08 941 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 DBR1Q9UK59 544 aaKnown RBP16.79■□□□□ 0.28
CLN3-249ENST00000636685 FBXL21Q9UKT6 434 aa16.79■□□□□ 0.28
CLN3-249ENST00000636685 CACNA1IQ9P0X4 2223 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms