RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 EPC1Q9H2F5 836 aa10.69□□□□□ -0.7
USP28-205ENST00000537706 PXMP2Q9NR77 195 aa10.69□□□□□ -0.7
USP28-205ENST00000537706 C1orf112Q9NSG2 853 aa10.69□□□□□ -0.7
USP28-205ENST00000537706 CLASP2O75122 1294 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 SRFP11831 508 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 UBA1P22314 1058 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 CSTF1Q05048 431 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 PPARAQ07869 468 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 NEDD9Q14511 834 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 IFNL3Q8IZI9 196 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 APPBP2Q92624 585 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 ZNF558Q96NG5 402 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 ARHGEF3Q9NR81 526 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 TYW1Q9NV66 732 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 GPAA1O43292 621 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 RANBP6O60518 1105 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 LRP3O75074 770 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 ZFYP08048 801 aaPredicted RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 GIT2Q14161 759 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 UTP14CQ5TAP6 766 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 TMEM57Q8N5G2 664 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 C12orf76Q8N812 135 aaPredicted RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 MRPL43Q8N983 215 aaKnown RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 STAMQ92783 540 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 SFXN1Q9H9B4 322 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 EPB41L4AQ9HCS5 686 aaPredicted RBP10.68□□□□□ -0.7
USP28-205ENST00000537706 SPG21Q9NZD8 308 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 ZMIZ1Q9ULJ6 1067 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 TRPV2Q9Y5S1 764 aa10.68□□□□□ -0.7
USP28-205ENST00000537706 TMEM8BA6NDV4 472 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 HOXA2O43364 376 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 NARSO43776 548 aaKnown RBP10.67□□□□□ -0.7
USP28-205ENST00000537706 ARP10275 920 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 CCND2P30279 289 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 ADAM17P78536 824 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 PPFIA1Q13136 1202 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 GNPTABQ3T906 1256 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 GPATCH4Q5T3I0 446 aaKnown RBP10.67□□□□□ -0.7
USP28-205ENST00000537706 DCLRE1AQ6PJP8 1040 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 RTN4RL1Q86UN2 441 aaPredicted RBP10.67□□□□□ -0.7
USP28-205ENST00000537706 PPFIBP1Q86W92 1011 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 DNAJB3Q8WWF6 145 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 ATP6V0A4Q9HBG4 840 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 DLGAP2Q9P1A6 1054 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 TUBE1Q9UJT0 475 aa10.67□□□□□ -0.7
USP28-205ENST00000537706 MAP1BP46821 2468 aaKnown RBP10.67□□□□□ -0.7
USP28-205ENST00000537706 DENND3A2RUS2 1198 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 C2orf71A6NGG8 1288 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 GBP2P32456 591 aaPredicted RBP10.66□□□□□ -0.7
USP28-205ENST00000537706 PJA1Q8NG27 643 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 TNPO1Q92973 898 aaKnown RBP10.66□□□□□ -0.7
USP28-205ENST00000537706 AGO3Q9H9G7 860 aaKnown RBP10.66□□□□□ -0.7
USP28-205ENST00000537706 IL17RBQ9NRM6 502 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 COL20A1Q9P218 1284 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 PADI3Q9ULW8 664 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 GTF3C3Q9Y5Q9 886 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 TTC3P53804 2025 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 NMT2O60551 498 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 CFBP00751 764 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 CHGBP05060 677 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 ZNF543Q08ER8 600 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 SPEM2Q0P670 501 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 N4BP2L1Q5TBK1 243 aaPredicted RBP10.66□□□□□ -0.7
USP28-205ENST00000537706 LAIR1Q6GTX8 287 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 ELMSAN1Q6PJG2 1045 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 KCNT2Q6UVM3 1135 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 LRSAM1Q6UWE0 723 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 TMC5Q6UXY8 1006 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 GPR149Q86SP6 731 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 TBC1D5Q92609 795 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 TOMM22Q9NS69 142 aa10.66□□□□□ -0.7
USP28-205ENST00000537706 RNF113AO15541 343 aaKnown RBP10.65□□□□□ -0.7
USP28-205ENST00000537706 CXCL14O95715 111 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 PDHBP11177 359 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 CDC37Q16543 378 aaPredicted RBP10.65□□□□□ -0.7
USP28-205ENST00000537706 METTL7BQ6UX53 244 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 UNQ6494/PRO21346Q6UXR6 183 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 FTSJ3Q8IY81 847 aaKnown RBP10.65□□□□□ -0.7
USP28-205ENST00000537706 ABI1Q8IZP0 508 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 OSBP2Q969R2 916 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 TMEM47Q9BQJ4 181 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 PDCD2LQ9BRP1 358 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 FAM126AQ9BYI3 521 aaPredicted RBP10.65□□□□□ -0.7
USP28-205ENST00000537706 MAP3K20Q9NYL2 800 aaKnown RBP10.65□□□□□ -0.7
USP28-205ENST00000537706 LHX6Q9UPM6 363 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.65□□□□□ -0.7
USP28-205ENST00000537706 FAM208BQ5VWN6 2430 aa10.65□□□□□ -0.7
USP28-205ENST00000537706 CEP250Q9BV73 2442 aa10.65□□□□□ -0.71
USP28-205ENST00000537706 CARNS1A5YM72 827 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 POTEMA6NI47 508 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 RRN3P2A6NIE6 340 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 LILRB5O75023 590 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 RAB11FIP3O75154 756 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 PDE4AP27815 886 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 NFX1Q12986 1120 aaKnown RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 PPP2R5DQ14738 602 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 PTPN14Q15678 1187 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 GRIK4Q16099 956 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 LETM2Q2VYF4 491 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms