RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ATP11BQ9Y2G3 1177 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 TICRRQ7Z2Z1 1910 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 MROH7Q68CQ1 1323 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PRC1O43663 620 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ZNF16P17020 682 aaPredicted RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 NDUFV2P19404 249 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CR2P20023 1033 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 SLC26A2P50443 739 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CACNB3P54284 484 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 SETQ01105 290 aaPredicted RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 CUL4AQ13619 759 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PFKFB3Q16875 520 aaPredicted RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 TREML2Q5T2D2 321 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PRAMEF18Q5VWM3 479 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PCNX4Q63HM2 1172 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 B4GALNT3Q6L9W6 998 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 APOA5Q6Q788 366 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 GADL1Q6ZQY3 521 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 DCLK2Q8N568 766 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 FANCBQ8NB91 859 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ACER1Q8TDN7 264 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 UBE2Q2Q8WVN8 375 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 RRP36Q96EU6 259 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 DYNLL2Q96FJ2 89 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 TBC1D32Q96NH3 1257 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 SEC62Q99442 399 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 FEZ1Q99689 392 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PRM3Q9NNZ6 103 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CLIP2Q9UDT6 1046 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 SAP30BPQ9UHR5 308 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 GMEB2Q9UKD1 530 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CCDC69A6NI79 296 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 M0R2N6 131 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 LAD1O00515 517 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 SEPT4O43236 478 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 DUSP11O75319 330 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 DEXIO95424 95 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 BMP15O95972 392 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 APPP05067 770 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 PFKMP08237 780 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 GNA11P29992 359 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 CDC42EP1Q00587 391 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 PTGDRQ13258 359 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 TMEM132BQ14DG7 1078 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 PCBP1Q15365 356 aaKnown RBP eCLIP3.25□□□□□ -1.89
MCF2-208ENST00000519895 NTRK3Q16288 839 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 CSRP2Q16527 193 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 Q4G0T1 1027 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 TMEM67Q5HYA8 995 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 IL31Q6EBC2 164 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 CYB5R4Q7L1T6 521 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 MIGA2Q7L4E1 593 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 FBXO11Q86XK2 927 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 NUP133Q8WUM0 1156 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 SLC9A7Q96T83 725 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 MMP19Q99542 508 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 JMJD4Q9H9V9 463 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 BARHL2Q9NY43 387 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 BTBD7Q9P203 1132 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 IL17BQ9UHF5 180 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 FBXO4Q9UKT5 387 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 TANC1Q9C0D5 1861 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 MINDY4BA8MYZ0 360 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 B8ZZF3 427 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 IFIT3O14879 490 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 SYNCRIPO60506 623 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 EIF3JO75822 258 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 KCNK5O95279 499 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 C1RP00736 705 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 XBP1P17861 261 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 TNFRSF8P28908 595 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 ABCD1P33897 745 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 TSR1Q2NL82 804 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 CCSAPQ6IQ19 270 aaPredicted RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 SCUBE3Q8IX30 993 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 PCSK9Q8NBP7 692 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 NSUN6Q8TEA1 469 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 NELL1Q92832 810 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 MAML3Q96JK9 1138 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 FGD4Q96M96 766 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 YTHDC1Q96MU7 727 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 UPF2Q9HAU5 1272 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 PRDM5Q9NQX1 630 aaPredicted RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 CYP39A1Q9NYL5 469 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 NXF1Q9UBU9 619 aaKnown RBP3.25□□□□□ -1.89
MCF2-208ENST00000519895 FAM184BQ9ULE4 1060 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 SLC12A7Q9Y666 1083 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 OTOGLQ3ZCN5 2332 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 DNHD1Q96M86 4753 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 SCN10AQ9Y5Y9 1956 aa3.25□□□□□ -1.89
MCF2-208ENST00000519895 IGSF10Q6WRI0 2623 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 ZBTB43O43298 467 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 DKC1O60832 514 aaKnown RBP eCLIP3.24□□□□□ -1.89
MCF2-208ENST00000519895 LGR5O75473 907 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 LYPLA2O95372 231 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 GDF11O95390 407 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 SP9P0CG40 484 aa3.24□□□□□ -1.89
MCF2-208ENST00000519895 ZNF865P0CJ78 1059 aaPredicted RBP3.24□□□□□ -1.89
MCF2-208ENST00000519895 XRCC6P12956 609 aaKnown RBP eCLIP3.24□□□□□ -1.89
MCF2-208ENST00000519895 AKR1A1P14550 325 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms