RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 ANKRD44Q8N8A2 993 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MLKLQ8NB16 471 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGAP45Q92619 1136 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 RPAP3Q9H6T3 665 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 C1orf112Q9NSG2 853 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 STK32BQ9NY57 414 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TBC1D7Q9P0N9 293 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 LRWD1Q9UFC0 647 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MOSPD1Q9UJG1 213 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 SYNJ1O43426 1573 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 EPRSP07814 1512 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DCTN3O75935 186 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 DEXIO95424 95 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 OCA2Q04671 838 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 ITIH4Q14624 930 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 EAPPQ56P03 285 aaPredicted RBP7.77□□□□□ -1.16
SYNE1-228ENST00000490135 SAPCD2Q86UD0 394 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 ALKBH8Q96BT7 664 aaKnown RBP7.77□□□□□ -1.16
SYNE1-228ENST00000490135 LRRC37BQ96QE4 947 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 ZBTB18Q99592 522 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 YIPF2Q9BWQ6 316 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 WDR35Q9P2L0 1181 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 PALD1Q9ULE6 856 aa7.77□□□□□ -1.16
SYNE1-228ENST00000490135 DAPK1P53355 1430 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 E7ENQ6 273 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 ZCCHC18P0CG32 403 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CASP14P31944 242 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 EPHB1P54762 984 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 BLMHQ13867 455 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 KRT25Q7Z3Z0 450 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 AGGF1Q8N302 714 aaeCLIP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 AGAP11Q8TF27 550 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 FAM129AQ9BZQ8 928 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 AS3MTQ9HBK9 375 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 NDE1Q9NXR1 346 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 UBN2Q6ZU65 1347 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 SMCO2A6NFE2 343 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 AP3B1O00203 1094 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 ABLIM1O14639 778 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 FOXO3O43524 673 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 PEX14O75381 377 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 YWHAHQ04917 246 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 MTHFD1LQ6UB35 978 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 ZBTB33Q86T24 672 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 NELFCDQ8IXH7 590 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 RFWD2Q8NHY2 731 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 NDUFA13Q9P0J0 144 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 SSH2Q76I76 1423 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 NPTXRO95502 500 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 USP46P62068 366 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 WASHC5Q12768 1159 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CEP78Q5JTW2 689 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CCNI2Q6ZMN8 369 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 KRT27Q7Z3Y8 459 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 MCF2L2Q86YR7 1114 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 BPIFA3Q9BQP9 254 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 DISC1Q9NRI5 854 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CSADQ9Y600 493 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 RALGAPBQ86X10 1494 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 SCAF11Q99590 1463 aaKnown RBP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 UBXN8O00124 270 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 HSPA1AP0DMV8 641 aaKnown RBP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 HSPA1BP0DMV9 641 aaKnown RBP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 PYGMP11217 842 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 TCF3P15923 654 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 RXRAP19793 462 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 TMOD1P28289 359 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 AARSP49588 968 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-228ENST00000490135 DAB2P98082 770 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 IL9RQ01113 521 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CALCRLQ16602 461 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 LMBR1LQ6UX01 489 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CROCCP3Q8IVE0 287 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 SUPT20HQ8NEM7 779 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 NCLNQ969V3 563 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 ZFYVE19Q96K21 471 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 TMEM60Q9H2L4 133 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 AASDHPPTQ9NRN7 309 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 CROTQ9UKG9 612 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 TLK1Q9UKI8 766 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 FIS1Q9Y3D6 152 aa7.77□□□□□ -1.17
SYNE1-228ENST00000490135 ATP8B3O60423 1300 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 SYNDIG1LA6NDD5 238 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 KRIT1O00522 736 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 UFL1O94874 794 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 TMEM191BP0C7N4 346 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 HSPA6P17066 643 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 STAT1P42224 750 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 SLC1A4P43007 532 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 DSG1Q02413 1049 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 PABPC4Q13310 644 aaKnown RBP eCLIP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 ART3Q13508 389 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 CREB3L3Q68CJ9 461 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 KIAA1841Q6NSI8 718 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 CCDC84Q86UT8 332 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-228ENST00000490135 RFX6Q8HWS3 928 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 RETREG2Q8NC44 543 aa7.76□□□□□ -1.17
SYNE1-228ENST00000490135 UHMK1Q8TAS1 419 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms