RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 PELP1Q8IZL8 1130 aaKnown RBP12.57□□□□□ -0.4
SYNE1-228ENST00000490135 MYT1Q01538 1121 aa12.54□□□□□ -0.4
SYNE1-228ENST00000490135 DCAF8L2P0C7V8 631 aa11.85□□□□□ -0.51
SYNE1-228ENST00000490135 TTBK1Q5TCY1 1321 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-228ENST00000490135 ERICH6Q7L0X2 663 aa11.48□□□□□ -0.57
SYNE1-228ENST00000490135 HRCP23327 699 aa11.38□□□□□ -0.59
SYNE1-228ENST00000490135 CENPBP07199 599 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-228ENST00000490135 PCGF6Q9BYE7 350 aa11.25□□□□□ -0.61
SYNE1-228ENST00000490135 CCER1Q8TC90 406 aaPredicted RBP11.24□□□□□ -0.61
SYNE1-228ENST00000490135 FAM9AQ8IZU1 332 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-228ENST00000490135 APLP2Q06481 763 aa11.14□□□□□ -0.63
SYNE1-228ENST00000490135 ZEB1P37275 1124 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-228ENST00000490135 PPARGC1BQ86YN6 1023 aaKnown RBP11.1□□□□□ -0.63
SYNE1-228ENST00000490135 EHMT2Q96KQ7 1210 aa11.06□□□□□ -0.64
SYNE1-228ENST00000490135 SUPT5HO00267 1087 aaKnown RBP11.06□□□□□ -0.64
SYNE1-228ENST00000490135 BCL11AQ9H165 835 aa11.01□□□□□ -0.65
SYNE1-228ENST00000490135 SCAF1Q9H7N4 1312 aaKnown RBP10.96□□□□□ -0.65
SYNE1-228ENST00000490135 GTF3C3Q9Y5Q9 886 aa10.94□□□□□ -0.66
SYNE1-228ENST00000490135 YTHDC1Q96MU7 727 aaKnown RBP10.9□□□□□ -0.66
SYNE1-228ENST00000490135 PRKCSHP14314 528 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-228ENST00000490135 ACIN1Q9UKV3 1341 aaKnown RBP10.84□□□□□ -0.67
SYNE1-228ENST00000490135 NEFLP07196 543 aa10.83□□□□□ -0.68
SYNE1-228ENST00000490135 DAXXQ9UER7 740 aaPredicted RBP10.77□□□□□ -0.68
SYNE1-228ENST00000490135 SLC24A1O60721 1099 aa10.73□□□□□ -0.69
SYNE1-228ENST00000490135 ANP32EQ9BTT0 268 aa10.69□□□□□ -0.7
SYNE1-228ENST00000490135 ATP1B4Q9UN42 357 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-228ENST00000490135 TRIM26Q12899 539 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-228ENST00000490135 EIF5BO60841 1220 aaKnown RBP10.59□□□□□ -0.71
SYNE1-228ENST00000490135 SHROOM4Q9ULL8 1493 aa10.58□□□□□ -0.72
SYNE1-228ENST00000490135 RANGAP1P46060 587 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-228ENST00000490135 NEUROD1Q13562 356 aa10.57□□□□□ -0.72
SYNE1-228ENST00000490135 GLIPR1L2Q4G1C9 344 aa10.56□□□□□ -0.72
SYNE1-228ENST00000490135 DIEXFQ68CQ4 756 aaKnown RBP10.56□□□□□ -0.72
SYNE1-228ENST00000490135 RTL5Q5HYW3 569 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-228ENST00000490135 MYT1LQ9UL68 1186 aa10.5□□□□□ -0.73
SYNE1-228ENST00000490135 ZNF316A6NFI3 1004 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-228ENST00000490135 POLR3GLQ9BT43 218 aa10.41□□□□□ -0.74
SYNE1-228ENST00000490135 CLSPNQ9HAW4 1339 aa10.38□□□□□ -0.75
SYNE1-228ENST00000490135 CSRNP3Q8WYN3 585 aa10.38□□□□□ -0.75
SYNE1-228ENST00000490135 BCANQ96GW7 911 aa10.36□□□□□ -0.75
SYNE1-228ENST00000490135 SLC4A1APQ9BWU0 796 aaKnown RBP10.34□□□□□ -0.75
SYNE1-228ENST00000490135 UBTFP17480 764 aaKnown RBP10.32□□□□□ -0.76
SYNE1-228ENST00000490135 CHIC1Q5VXU3 224 aa10.27□□□□□ -0.76
SYNE1-228ENST00000490135 CDK11AQ9UQ88 783 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-228ENST00000490135 CNGB1Q14028 1251 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-228ENST00000490135 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-228ENST00000490135 HNRNPUL2Q1KMD3 747 aaKnown RBP10.24□□□□□ -0.77
SYNE1-228ENST00000490135 ZBTB47Q9UFB7 747 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-228ENST00000490135 PODXL2Q9NZ53 605 aa10.23□□□□□ -0.77
SYNE1-228ENST00000490135 TRIM41Q8WV44 630 aa10.22□□□□□ -0.77
SYNE1-228ENST00000490135 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-228ENST00000490135 NBR1Q14596 966 aa10.2□□□□□ -0.78
SYNE1-228ENST00000490135 CCDC136Q96JN2 1154 aa10.2□□□□□ -0.78
SYNE1-228ENST00000490135 RTN4Q9NQC3 1192 aaKnown RBP10.2□□□□□ -0.78
SYNE1-228ENST00000490135 PKNOX2Q96KN3 472 aa10.19□□□□□ -0.78
SYNE1-228ENST00000490135 DEKP35659 375 aaKnown RBP10.18□□□□□ -0.78
SYNE1-228ENST00000490135 ANO8Q9HCE9 1232 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-228ENST00000490135 ERICH6BQ5W0A0 696 aa10.13□□□□□ -0.79
SYNE1-228ENST00000490135 NISCHQ9Y2I1 1504 aa10.12□□□□□ -0.79
SYNE1-228ENST00000490135 ITGAEP38570 1179 aa10.11□□□□□ -0.79
SYNE1-228ENST00000490135 FKBP8Q14318 412 aa10.08□□□□□ -0.8
SYNE1-228ENST00000490135 LOC105371045A0A1W2PR82 267 aa10.07□□□□□ -0.8
SYNE1-228ENST00000490135 ANP32AP39687 249 aaKnown RBP10.07□□□□□ -0.8
SYNE1-228ENST00000490135 DCAF1Q9Y4B6 1507 aa10.05□□□□□ -0.8
SYNE1-228ENST00000490135 UBE2Q2Q8WVN8 375 aa10.04□□□□□ -0.8
SYNE1-228ENST00000490135 TSHZ2Q9NRE2 1034 aa10.04□□□□□ -0.8
SYNE1-228ENST00000490135 SUPT16HQ9Y5B9 1047 aaKnown RBP10.04□□□□□ -0.8
SYNE1-228ENST00000490135 CCDC180Q9P1Z9 1646 aa10.01□□□□□ -0.81
SYNE1-228ENST00000490135 CANXP27824 592 aaKnown RBP10□□□□□ -0.81
SYNE1-228ENST00000490135 ANP32BQ92688 251 aaKnown RBP9.99□□□□□ -0.81
SYNE1-228ENST00000490135 NEFMP07197 916 aa9.98□□□□□ -0.81
SYNE1-228ENST00000490135 SALL2Q9Y467 1007 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-228ENST00000490135 A0A0U1RQG5 324 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-228ENST00000490135 VSIG10Q8N0Z9 540 aa9.96□□□□□ -0.82
SYNE1-228ENST00000490135 CDK11BP21127 795 aaKnown RBP9.95□□□□□ -0.82
SYNE1-228ENST00000490135 RBM19Q9Y4C8 960 aaKnown RBP9.95□□□□□ -0.82
SYNE1-228ENST00000490135 MIER1Q8N108 512 aa9.93□□□□□ -0.82
SYNE1-228ENST00000490135 NAP1L5Q96NT1 182 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-228ENST00000490135 PLEKHG5O94827 1062 aa9.9□□□□□ -0.82
SYNE1-228ENST00000490135 NOP58Q9Y2X3 529 aaKnown RBP9.89□□□□□ -0.83
SYNE1-228ENST00000490135 NPM2Q86SE8 214 aaKnown RBP9.89□□□□□ -0.83
SYNE1-228ENST00000490135 RSPH6AQ9H0K4 717 aa9.86□□□□□ -0.83
SYNE1-228ENST00000490135 TRIM52Q96A61 297 aa9.86□□□□□ -0.83
SYNE1-228ENST00000490135 HSP90AA1P07900 732 aaKnown RBP9.86□□□□□ -0.83
SYNE1-228ENST00000490135 TNNT2P45379 298 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-228ENST00000490135 TIMELESSQ9UNS1 1208 aa9.81□□□□□ -0.84
SYNE1-228ENST00000490135 PDE4CQ08493 712 aa9.81□□□□□ -0.84
SYNE1-228ENST00000490135 ZNF326Q5BKZ1 582 aaKnown RBP9.81□□□□□ -0.84
SYNE1-228ENST00000490135 NCLP19338 710 aaKnown RBP9.79□□□□□ -0.84
SYNE1-228ENST00000490135 ANP32CO43423 234 aa9.79□□□□□ -0.84
SYNE1-228ENST00000490135 FAM50AQ14320 339 aaKnown RBP9.78□□□□□ -0.84
SYNE1-228ENST00000490135 HSP90AA2PQ14568 343 aaPredicted RBP9.77□□□□□ -0.84
SYNE1-228ENST00000490135 MYO15BQ96JP2 1530 aa9.76□□□□□ -0.85
SYNE1-228ENST00000490135 UPF2Q9HAU5 1272 aaKnown RBP9.76□□□□□ -0.85
SYNE1-228ENST00000490135 AMER1Q5JTC6 1135 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-228ENST00000490135 PPM1GO15355 546 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-228ENST00000490135 LAS1LQ9Y4W2 734 aaKnown RBP9.71□□□□□ -0.85
SYNE1-228ENST00000490135 ARXQ96QS3 562 aa9.7□□□□□ -0.86
SYNE1-228ENST00000490135 ESF1Q9H501 851 aaKnown RBP9.69□□□□□ -0.86
SYNE1-228ENST00000490135 IL27Q8NEV9 243 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms