RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SYT9Q86SS6 491 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 BLIDQ8IZY5 108 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 TMEM87AQ8NBN3 555 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 RETREG2Q8NC44 543 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 RASGRP4Q8TDF6 673 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 COL26A1Q96A83 441 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 ATG4CQ96DT6 458 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 C6orf50Q9HD87 102 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 RIC8AQ9NPQ8 531 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 ADAMTS5Q9UNA0 930 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 AGTPBP1Q9UPW5 1226 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 CNPY2Q9Y2B0 182 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 PCDHA1Q9Y5I3 950 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 MYH7BA7E2Y1 1941 aa7.6□□□□□ -1.19
USP48-208ENST00000479177 ABCB11O95342 1321 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 SMCO2A6NFE2 343 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 VWA5AO00534 786 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 FIBPO43427 364 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 ZBTB48P10074 688 aaPredicted RBP7.59□□□□□ -1.19
USP48-208ENST00000479177 NCLP19338 710 aaKnown RBP7.59□□□□□ -1.19
USP48-208ENST00000479177 ADH6P28332 368 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 GNA11P29992 359 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 HOXA7P31268 230 aaPredicted RBP7.59□□□□□ -1.19
USP48-208ENST00000479177 GTF2A2P52657 109 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 TRAF1Q13077 416 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 HIF1AQ16665 826 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 UBE2SQ16763 222 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 USH1GQ495M9 461 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 ATL3Q6DD88 541 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 FASTKD5Q7L8L6 764 aaKnown RBP7.59□□□□□ -1.19
USP48-208ENST00000479177 KRT25Q7Z3Z0 450 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 SAPCD2Q86UD0 394 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 RASAL3Q86YV0 1011 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 TREML1Q86YW5 311 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 REXO1Q8N1G1 1221 aaKnown RBP7.59□□□□□ -1.19
USP48-208ENST00000479177 BICD2Q8TD16 824 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 CUL5Q93034 780 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 BHMTQ93088 406 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 ZNF396Q96N95 335 aaPredicted RBP7.59□□□□□ -1.19
USP48-208ENST00000479177 USP28Q96RU2 1077 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 FTOQ9C0B1 505 aaKnown RBP eCLIP7.59□□□□□ -1.19
USP48-208ENST00000479177 GLT8D2Q9H1C3 349 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 CCPG1Q9ULG6 757 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 PCDHA6Q9UN73 950 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 PCDHA8Q9Y5H6 950 aa7.59□□□□□ -1.19
USP48-208ENST00000479177 ELP1O95163 1332 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 CCL15-CCL14A0A0B4J2E2 113 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 ATP2A1O14983 1001 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 ZBTB39O15060 712 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 ZBED4O75132 1171 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 TOMM70O94826 608 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 YEATS4O95619 227 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 CETPP11597 493 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 TRAPPC10P48553 1259 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 NASPP49321 788 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 TOB1P50616 345 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 OAZ1P54368 228 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 IRX3P78415 501 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 GHRHRQ02643 423 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 MTMR3Q13615 1198 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 COG2Q14746 738 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 CCL15Q16663 113 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 RILPL1Q5EBL4 403 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 LBX2Q6XYB7 198 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 PIK3AP1Q6ZUJ8 805 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 TEX2Q8IWB9 1127 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 LEO1Q8WVC0 666 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 BRI3BPQ8WY22 251 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 TRIM11Q96F44 468 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 SCAND2PQ9GZW5 306 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 ASCC2Q9H1I8 757 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 PSTPIP2Q9H939 334 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 RAVER2Q9HCJ3 691 aaKnown RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP48-208ENST00000479177 TMEM260Q9NX78 707 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 RTEL1Q9NZ71 1219 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 PNMA2Q9UL42 364 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 ZNF214Q9UL59 606 aaPredicted RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 MRPL11Q9Y3B7 192 aaKnown RBP7.58□□□□□ -1.2
USP48-208ENST00000479177 LCTP09848 1927 aa7.58□□□□□ -1.2
USP48-208ENST00000479177 CCDC194A0A1B0GVG4 234 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 BTBD19C9JJ37 291 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 GOLGA6L22H0YM25 854 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 MEIS2O14770 477 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 CNMDO75829 334 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 YY1P25490 414 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 MRPL12P52815 198 aaKnown RBP7.57□□□□□ -1.2
USP48-208ENST00000479177 HERVK_113P62684 666 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 FSTL1Q12841 308 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 PABPC4Q13310 644 aaKnown RBP eCLIP7.57□□□□□ -1.2
USP48-208ENST00000479177 AP3B2Q13367 1082 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 TMEM132BQ14DG7 1078 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 NONOQ15233 471 aaKnown RBP eCLIP7.57□□□□□ -1.2
USP48-208ENST00000479177 PTPAQ15257 358 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 RSPO4Q2I0M5 234 aaPredicted RBP7.57□□□□□ -1.2
USP48-208ENST00000479177 TTC38Q5R3I4 469 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 JAKMIP3Q5VZ66 844 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 ANO1Q5XXA6 986 aa7.57□□□□□ -1.2
USP48-208ENST00000479177 SNRNP48Q6IEG0 339 aaKnown RBP7.57□□□□□ -1.2
USP48-208ENST00000479177 RGMBQ6NW40 437 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms