RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 RNF207Q6ZRF8 634 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 PDZD3Q86UT5 571 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 TRIM50Q86XT4 487 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 THNSL1Q8IYQ7 743 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 LMBR1Q8WVP7 490 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 MRPS27Q92552 414 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 GPKOWQ92917 476 aaPredicted RBP eCLIP5.7□□□□□ -1.5
USP4-209ENST00000475873 SECISBP2LQ93073 1101 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 ZBTB10Q96DT7 871 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 TAAR1Q96RJ0 339 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 HNRNPABQ99729 332 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 DDX23Q9BUQ8 820 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 ADAM33Q9BZ11 813 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 TMX1Q9H3N1 280 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 EPB41L4AQ9HCS5 686 aaPredicted RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 ENTPD7Q9NQZ7 604 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 PRMT8Q9NR22 394 aaPredicted RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 TYW1Q9NV66 732 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 SPATA6Q9NWH7 488 aaPredicted RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 GMEB2Q9UKD1 530 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 ISY1Q9ULR0 285 aaKnown RBP5.7□□□□□ -1.5
USP4-209ENST00000475873 LZTS1Q9Y250 596 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 GPSM3Q9Y4H4 160 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 DOCK5Q9H7D0 1870 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 GREB1Q4ZG55 1949 aa5.7□□□□□ -1.5
USP4-209ENST00000475873 TMEM8BA6NDV4 472 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 SHISA7A6NL88 538 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 H3BRB1 525 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 GOLIM4O00461 696 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 LAMTOR5O43504 91 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 PPFIA4O75335 1185 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 C1QL1O75973 258 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 PRB1P04280 392 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 LGALS2P05162 132 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 RETP07949 1114 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 PLCB3Q01970 1234 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 FZD5Q13467 585 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 WTAPQ15007 396 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 ATAT1Q5SQI0 421 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 CELF3Q5SZQ8 465 aaKnown RBP5.69□□□□□ -1.5
USP4-209ENST00000475873 LAIR1Q6GTX8 287 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 RCSD1Q6JBY9 416 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 DCLRE1AQ6PJP8 1040 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 C19orf48Q6RUI8 117 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 LRRC55Q6ZSA7 311 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 TSHZ1Q6ZSZ6 1077 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 OTOP3Q7RTS5 596 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 GPR149Q86SP6 731 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 MRPL43Q8N983 215 aaKnown RBP5.69□□□□□ -1.5
USP4-209ENST00000475873 SLC22A17Q8WUG5 538 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 AUTS2Q8WXX7 1259 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 MYADMQ96S97 322 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 RPP25Q9BUL9 199 aaKnown RBP5.69□□□□□ -1.5
USP4-209ENST00000475873 TUT1Q9H6E5 874 aaKnown RBP5.69□□□□□ -1.5
USP4-209ENST00000475873 NGRNQ9NPE2 291 aaKnown RBP5.69□□□□□ -1.5
USP4-209ENST00000475873 RNF19AQ9NV58 838 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 IGSF9Q9P2J2 1179 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 TNNQ9UQP3 1299 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 PCDHB12Q9Y5F1 795 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 SLC4A4Q9Y6R1 1079 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 MYH15Q9Y2K3 1946 aa5.69□□□□□ -1.5
USP4-209ENST00000475873 COL12A1Q99715 3063 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 PIEZO2Q9H5I5 2752 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 TBKBP1A7MCY6 615 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 GSG1L2A8MUP6 293 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 NMT2O60551 498 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 LRP3O75074 770 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 FGFR1P11362 822 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SCG2P13521 617 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 CD72P21854 359 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 UBA1P22314 1058 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 RFX1P22670 979 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 HOXC13P31276 330 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 LIMK1P53667 647 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 FOXC1Q12948 553 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SRSF5Q13243 272 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 LAMC2Q13753 1193 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SF3A2Q15428 464 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 SBK1Q52WX2 424 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 PSAPL1Q6NUJ1 521 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 BTNL9Q6UXG8 535 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 CCDC149Q6ZUS6 474 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 NEDD1Q8NHV4 660 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SYTL5Q8TDW5 730 aaPredicted RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 DDX1Q92499 740 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 ACSF2Q96CM8 615 aaPredicted RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 BORCS6Q96GS4 357 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SPATA33Q96N06 139 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 PUS7LQ9H0K6 701 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 MKNK2Q9HBH9 465 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SLC2A4RGQ9NR83 387 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 IL17RBQ9NRM6 502 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 NOB1Q9ULX3 412 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 CDY2AQ9Y6F7 541 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 KAT6AQ92794 2004 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 ANKRD17O75179 2603 aaKnown RBP5.68□□□□□ -1.5
USP4-209ENST00000475873 MYH7P12883 1935 aa5.68□□□□□ -1.5
USP4-209ENST00000475873 SPAG17Q6Q759 2223 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 KANSL1LA0AUZ9 987 aa5.67□□□□□ -1.5
USP4-209ENST00000475873 HRO43593 1189 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms