RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 BAZ2BQ9UIF8 2168 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 TAP1Q03518 808 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 CDHR1Q96JP9 859 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 NLRC4Q9NPP4 1024 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ARL2BPQ9Y2Y0 163 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 CNTNAP5Q8WYK1 1306 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SF3B3Q15393 1217 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 COL23A1Q86Y22 540 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 BANK1Q8NDB2 785 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SH3GL3Q99963 347 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 STK33Q9BYT3 514 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SCOCQ9UIL1 159 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ROBO3Q96MS0 1386 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ATP1A1P05023 1023 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 DRG2P55039 364 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 OTUD6AQ7L8S5 288 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 VPS52Q8N1B4 723 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 PCDHGC5Q9Y5F6 944 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 CASZ1Q86V15 1759 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 NSFP46459 744 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SURF1Q15526 300 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 TTI2Q6NXR4 508 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SUPT20HQ8NEM7 779 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 LRRC8CQ8TDW0 803 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 TBCKQ8TEA7 893 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ZC3H12CQ9C0D7 883 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SLC39A2Q9NP94 309 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 MAPK8IP1Q9UQF2 711 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 LIN7AO14910 233 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 FDX1P10109 184 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 C11orf63Q6NUN7 778 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 PAGR1Q9BTK6 254 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ZNF446Q9NWS9 450 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 NBPF26B4DH59 902 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 GCKP35557 465 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 TECP42680 631 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 C2orf54Q08AI8 447 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 PDCD2Q16342 344 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 NBPF15Q8N660 670 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.6□□□□□ -1.19
SYNE1-216ENST00000461872 PRDM1O75626 825 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 AMPD2Q01433 879 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 E2F4Q16254 413 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 MUM1Q2TAK8 710 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 TBC1D9BQ66K14 1250 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 SAAL1Q96ER3 474 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 BICD1Q96G01 975 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 GBP5Q96PP8 586 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ACTL7BQ9Y614 415 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 P4HA1P13674 534 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 NAA35Q5VZE5 725 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 DPF2Q92785 391 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 STAMBPL1Q96FJ0 436 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 JPH2Q9BR39 696 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 MYO1FO00160 1098 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ZBTB5O15062 677 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 GAS7O60861 476 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PALMO75781 387 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 TMEM253P0C7T8 217 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 BCAMP50895 628 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 AP3M2P53677 418 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 SPARCL1Q14515 664 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 NDUFA13Q9P0J0 144 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 GDAQ9Y2T3 454 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 FGRP09769 529 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 GZMAP12544 262 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 MYL7Q01449 175 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ACTN3Q08043 901 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ZNF677Q86XU0 584 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 SIKE1Q9BRV8 207 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 TUFT1Q9NNX1 390 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PXDNQ92626 1479 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 KNOP1Q1ED39 458 aaKnown RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 KLHL38Q2WGJ6 581 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PAF1Q8N7H5 531 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PNKPQ96T60 521 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 TRAIPQ9BWF2 469 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 MRPL40Q9NQ50 206 aaKnown RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ARFGEF2Q9Y6D5 1785 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 LCA5LO95447 670 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 FGGP02679 453 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PLA2G4BP0C869 781 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 SKIV2L2P42285 1042 aaKnown RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PTK2Q05397 1052 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ILF2Q12905 390 aaKnown RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 MYCT1Q8N699 235 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 SLAIN2Q9P270 581 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 SERPINB13Q9UIV8 391 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ITIH2P19823 946 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PPP4CP60510 307 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 CYFIP2Q96F07 1278 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PABPC3Q9H361 631 aaKnown RBP7.59□□□□□ -1.19
SYNE1-216ENST00000461872 DONSONQ9NYP3 566 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 KIAA1024Q9UPX6 916 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PCDHA1Q9Y5I3 950 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 ELF1P32519 619 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 PDCLQ13371 301 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 RIPK1Q13546 671 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 TMEM139Q8IV31 216 aa7.59□□□□□ -1.19
SYNE1-216ENST00000461872 FLAD1Q8NFF5 587 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms