RNA–Protein interactions for RNA: YPR189W

SKI3, Transcript of Ski complex component and TPR protein, yeast

Gene SKI3, Length 4,299 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKI3	YPR189W	RIP1	P08067	215 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	TKL1	P23254	680 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	YCL068C	P25593	260 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	HSP104	P31539	908 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	1.54	□□□□□ -2.16	not detected
SKI3	YPR189W	OCT1	P35999	772 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	EFM2	P38347	419 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	TCD1	P38756	429 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	RPS10B	P46784	105 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	GTO1	P48239	356 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	RTT102	P53330	157 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	YTP1	P53584	459 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	DBP6	P53734	629 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	NCE102	Q12207	173 aa	RIP-Chip data	1.54	□□□□□ -2.16	not detected
SKI3	YPR189W	FRE7	Q12333	620 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	BRR1	Q99177	341 aa	Predicted RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	YPR089W	O13585	888 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	SEC63	P14906	663 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	ATP10	P18496	279 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	MEK1	P24719	497 aa	Predicted RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	SAC1	P32368	623 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	CYS4	P32582	507 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	RPC34	P32910	317 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	CAB3	P36076	571 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	GPI16	P38875	610 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	TFG2	P41896	400 aa	Predicted RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	BRO1	P48582	844 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	UBP8	P50102	471 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	ORC5	P50874	479 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	YPR003C	P53394	754 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	BUR2	Q05949	395 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	IPK1	Q06667	281 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	VAC14	Q06708	880 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	MCH4	Q08268	501 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	ETT1	Q08421	412 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	YLR422W	Q06409	1932 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	MES1	P00958	751 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	CHO1	P08456	276 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	SSA3	P09435	649 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	SNF3	P10870	884 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	MGR1	P25573	417 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	SMY1	P32364	656 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	ASF2	P32448	525 aa	Predicted RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	SOR1	P35497	357 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	SWC5	P38326	303 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	RRP4	P38792	359 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	STN1	P38960	494 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	TAX4	P47030	604 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	BUL1	P48524	976 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	TIM21	P53220	239 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	YNL234W	P53857	426 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	YLR455W	Q06188	304 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	SOR2	Q07786	357 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	YLL056C	Q12177	298 aa		1.54	□□□□□ -2.16
SKI3	YPR189W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	1.54	□□□□□ -2.16	RIP-Chip
SKI3	YPR189W	PKH2	Q12236	1081 aa	Known RBP	1.54	□□□□□ -2.16
SKI3	YPR189W	RNR2	P09938	399 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	RNA1	P11745	407 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	CNA1	P23287	553 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	VPS3	P23643	1011 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	SIN4	P32259	974 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	KRE6	P32486	720 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	1.53	□□□□□ -2.16	RIP-Chip
SKI3	YPR189W	YNK1	P36010	153 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	RSM22	P36056	628 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	PHB2	P50085	310 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	BUD32	P53323	261 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	YNL134C	P53912	376 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	SMX3	P54999	86 aa	Predicted RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	CAB5	Q03941	241 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	URC2	Q04411	772 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	ECM7	Q06200	448 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	YLR173W	Q06247	608 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	BTS1	Q12051	335 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	KRE5	P22023	1365 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	JIP3	O13555	125 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	PEP4	P07267	405 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	YBR056W	P38081	501 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	DUG2	P38149	878 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	LAG1	P38703	411 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	YHR177W	P38867	453 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	DRN1	P53255	507 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	RRN11	Q04712	507 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	MDM36	Q06820	579 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	YDL218W	Q07629	317 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	NSE1	Q07913	336 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	YPR1	Q12458	312 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	SPO24	Q3E752	67 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	FAB1	P34756	2278 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	ADE4	P04046	510 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	YLL053C	P0CD98	152 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	RSR1	P13856	272 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	NUP1	P20676	1076 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	SAT4	P25333	603 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	PSO2	P30620	661 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	YSC83	P32792	385 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	COX13	P32799	129 aa		1.53	□□□□□ -2.16
SKI3	YPR189W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	1.53	□□□□□ -2.16	not detected
SKI3	YPR189W	MTR2	P34232	184 aa	Known RBP	1.53	□□□□□ -2.16
SKI3	YPR189W	SPT10	P35208	640 aa		1.53	□□□□□ -2.16

Retrieved 100 of 5,963 RNA–protein pairs in 34.8 ms