RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	EXG1	P23776	448 aa	Known RBP	3.05	□□□□□ -1.92
CUP9	YPL177C	CSE2	P33308	149 aa		3.05	□□□□□ -1.92
CUP9	YPL177C	YJL055W	P47044	245 aa		3.05	□□□□□ -1.92
CUP9	YPL177C	YJR085C	P47131	105 aa	Known RBP	3.05	□□□□□ -1.92
CUP9	YPL177C	YDR341C	Q05506	607 aa	Known RBP	3.05	□□□□□ -1.92
CUP9	YPL177C	PAL1	Q05518	499 aa	Known RBP	3.05	□□□□□ -1.92
CUP9	YPL177C	RAX1	Q08760	435 aa		3.05	□□□□□ -1.92
CUP9	YPL177C	RBD2	Q12270	262 aa		3.05	□□□□□ -1.92
CUP9	YPL177C	AHC1	Q12433	566 aa		3.05	□□□□□ -1.92
CUP9	YPL177C	SUP35	P05453	685 aa	Known RBP	3.04	□□□□□ -1.92
CUP9	YPL177C	PDE2	P06776	526 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	RPL1A	P0CX43	217 aa	Known RBP	3.04	□□□□□ -1.92
CUP9	YPL177C	RPL1B	P0CX44	217 aa	Known RBP	3.04	□□□□□ -1.92
CUP9	YPL177C	CAP2	P13517	287 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	HSP104	P31539	908 aa	Known RBP	3.04	□□□□□ -1.92
CUP9	YPL177C	SKN1	P33336	771 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	MRPL10	P36520	322 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	MMF1	P40185	145 aa	Known RBP	3.04	□□□□□ -1.92
CUP9	YPL177C	YIL029C	P40538	142 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	TOS3	P43637	560 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	BRO1	P48582	844 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	ROG1	P53118	685 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	MDG1	P53885	366 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	FDH1	Q08911	376 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	RUP1	Q12242	671 aa		3.04	□□□□□ -1.92
CUP9	YPL177C	OPI3	P05375	206 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	NAM2	P11325	894 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	RVS161	P25343	265 aa	Known RBP	3.03	□□□□□ -1.92
CUP9	YPL177C	PHO91	P27514	894 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	PHA2	P32452	334 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	RRP1	P35178	278 aa	Predicted RBP	3.03	□□□□□ -1.92
CUP9	YPL177C	QDR3	P38227	689 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	MDE1	P47095	244 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	MRM2	P53123	320 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	MEH1	Q02205	184 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	PEX25	Q02969	394 aa		3.03	□□□□□ -1.92
CUP9	YPL177C	DPH5	P32469	300 aa	Predicted RBP	3.02	□□□□□ -1.93
CUP9	YPL177C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
CUP9	YPL177C	YSC83	P32792	385 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	PFF1	P38244	976 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	COX14	P39103	70 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	GDI1	P39958	451 aa	Known RBP	3.02	□□□□□ -1.93
CUP9	YPL177C	TOS2	P50078	622 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	PMT5	P52867	743 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	SDT1	P53078	280 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	COS1	P53822	381 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	SXM1	Q04175	944 aa	Known RBP	3.02	□□□□□ -1.93
CUP9	YPL177C	ECM7	Q06200	448 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	MHR1	Q06630	226 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	RNH203	Q12338	110 aa		3.02	□□□□□ -1.93
CUP9	YPL177C	SNU66	Q12420	587 aa	Predicted RBP	3.02	□□□□□ -1.93
CUP9	YPL177C	ATP1	P07251	545 aa	Known RBP	3.01	□□□□□ -1.93
CUP9	YPL177C	RRP7	P25368	297 aa	Predicted RBP	3.01	□□□□□ -1.93
CUP9	YPL177C	MDL1	P33310	695 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	PEX5	P35056	612 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	LCB3	P47013	409 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	TIS11	P47977	285 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	MTQ1	P53944	314 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	VPS9	P54787	451 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	MDM36	Q06820	579 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	NDE2	Q07500	545 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	NSE1	Q07913	336 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	IRC25	Q07951	179 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	IZH2	Q12442	317 aa		3.01	□□□□□ -1.93
CUP9	YPL177C	SSC1	P0CS90	654 aa	Known RBP	3	□□□□□ -1.93
CUP9	YPL177C	SLM5	P25345	492 aa	Known RBP	3	□□□□□ -1.93
CUP9	YPL177C	YIP5	P53108	310 aa		3	□□□□□ -1.93
CUP9	YPL177C	SPR6	Q01684	191 aa		3	□□□□□ -1.93
CUP9	YPL177C	ADA2	Q02336	434 aa		3	□□□□□ -1.93
CUP9	YPL177C	CUE5	Q08412	411 aa	Known RBP	3	□□□□□ -1.93
CUP9	YPL177C	WTM1	Q12363	437 aa	Known RBP	3	□□□□□ -1.93
CUP9	YPL177C	POM152	P39685	1337 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	RPL12A	P0CX53	165 aa	Known RBP	2.99	□□□□□ -1.93
CUP9	YPL177C	RPL12B	P0CX54	165 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	HXT1	P32465	570 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	COX13	P32799	129 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	YHK8	P38776	514 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	MNL1	P38888	796 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	MLH1	P38920	769 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	AIM10	P39965	576 aa	Known RBP	2.99	□□□□□ -1.93
CUP9	YPL177C	ATM1	P40416	690 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	STE24	P47154	453 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	RRP46	P53256	223 aa	Predicted RBP	2.99	□□□□□ -1.93
CUP9	YPL177C	YGR117C	P53270	476 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	YLR152C	P54072	576 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	TDA1	Q03533	586 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	NDL1	Q06568	189 aa		2.99	□□□□□ -1.93
CUP9	YPL177C	YGK3	Q12222	375 aa	Predicted RBP	2.99	□□□□□ -1.93
CUP9	YPL177C	MSI1	P13712	422 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	YEF1	P32622	495 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	SEC28	P40509	296 aa	Known RBP	2.98	□□□□□ -1.93
CUP9	YPL177C	YDR541C	Q03049	344 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	URC2	Q04411	772 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	RIF2	Q06208	395 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	ASA1	Q06822	443 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	SMF3	Q12078	473 aa	Predicted RBP	2.98	□□□□□ -1.93
CUP9	YPL177C	CEX1	Q12453	761 aa		2.98	□□□□□ -1.93
CUP9	YPL177C	SPR1	P32603	445 aa		2.97	□□□□□ -1.93
CUP9	YPL177C	SPP381	P38282	291 aa	Predicted RBP	2.97	□□□□□ -1.93
CUP9	YPL177C	JEM1	P40358	645 aa		2.97	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 24.4 ms