RNA–Protein interactions for RNA: YNL224C

SQS1, Transcript of Protein that stimulates the ATPase and helicase activities of Prp43p, yeast

Gene SQS1, Length 2,304 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SQS1	YNL224C	YER152C	P10356	443 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	MRP2	P10663	115 aa	Predicted RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	SNA3	P14359	133 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	CLB2	P24869	491 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	CHA1	P25379	360 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	HRR25	P29295	494 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	PRE4	P30657	266 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	MVD1	P32377	396 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
SQS1	YNL224C	HYM1	P32464	399 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	PFF1	P38244	976 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	IML3	P38265	245 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	SET5	P38890	526 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	BAT1	P38891	393 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	MLH1	P38920	769 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	RRT14	P40470	206 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	MAF1	P41910	395 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	HIT1	P46973	164 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	AAD10	P47182	288 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	RHO5	P53879	331 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	RHO3	Q00245	231 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	APM1	Q00776	475 aa	Predicted RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	YSA1	Q01976	231 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	MTD1	Q02046	320 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	MRPL13	Q02204	264 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	YDR391C	Q04170	232 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	YDR109C	Q04585	715 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	BCH1	Q05029	724 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	HRD3	Q05787	833 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	TPO3	Q06451	622 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	ZEO1	Q08245	113 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	RRP40	Q08285	240 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	GPM2	Q12008	311 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	USB1	Q12208	290 aa	Known RBP	3.17	□□□□□ -1.9
SQS1	YNL224C	APM4	Q99186	491 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	NUP170	P38181	1502 aa		3.17	□□□□□ -1.9
SQS1	YNL224C	HTB1	P02293	131 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	HTB2	P02294	131 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	URA3	P03962	267 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	QCR2	P07257	368 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	PEP3	P27801	918 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	PRP18	P33411	251 aa	Predicted RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	SKT5	P34226	696 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	PHD1	P36093	366 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	FLO10	P36170	1169 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	LDH1	P38139	375 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	MMS21	P38632	267 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	FMP32	P43557	207 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	UBP6	P43593	499 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	ECM27	P47144	725 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	LYS20	P48570	428 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	ORC5	P50874	479 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YGR026W	P53217	278 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	CDC55	Q00362	526 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YPL034W	Q03083	165 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	SNO1	Q03144	224 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	MUS81	Q04149	632 aa	Predicted RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	YLR179C	Q06252	201 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	CDA1	Q06702	301 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	ALE1	Q08548	619 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	NMD4	Q12129	218 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YPL150W	Q12152	901 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YOR029W	Q12243	111 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	NDJ1	Q12366	352 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	ROM2	P51862	1356 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	REV3	P14284	1504 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	ATP2	P00830	511 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	HIS5	P07172	385 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	ATP1	P07251	545 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
SQS1	YNL224C	MOD5	P07884	428 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	NHP6A	P11632	93 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	MSN1	P22148	382 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	MGR1	P25573	417 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	MCM4	P30665	933 aa	Known RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	SPT14	P32363	452 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TIP20	P33891	701 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	JEN1	P36035	616 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	APT2	P36973	181 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	FMP23	P38231	175 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	DER1	P38307	211 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	VMA7	P39111	118 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	SER3	P40054	469 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	LCP5	P40079	357 aa	Predicted RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	COA1	P40452	197 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	GTT1	P40582	234 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	SWP82	P43554	623 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YFR057W	P43625	151 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YJL045W	P47052	634 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YJR149W	P47177	404 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	CWC23	P52868	283 aa	Predicted RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	PPT1	P53043	513 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	TPN1	P53099	579 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	COG5	P53951	403 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YNL040W	P53960	456 aa	Predicted RBP	3.16	□□□□□ -1.9
SQS1	YNL224C	YDR179W-A	Q03983	463 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	DLT1	Q04216	342 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	DPP1	Q05521	289 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	YPS7	Q06325	596 aa		3.16	□□□□□ -1.9
SQS1	YNL224C	CYK3	Q07533	885 aa		3.16	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms