RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	YMR181C	Q03231	154 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	AAD15	Q08361	143 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	HIF1	Q12373	385 aa		3.15	□□□□□ -1.91
WHI3	YNL197C	RNA1	P11745	407 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	MCK1	P21965	375 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	SLY1	P22213	666 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	RRP1	P35178	278 aa	Predicted RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	AZR1	P50080	613 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	YPL199C	Q08954	240 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	AFT2	Q08957	416 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	TPT1	Q12272	230 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	AIM45	Q12480	344 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	RPS16A	P0CX51	143 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	RPS16B	P0CX52	143 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	SRB2	P34162	210 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	KKQ8	P36004	724 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	YBR056W	P38081	501 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	YBR139W	P38109	508 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	LIN1	P38852	340 aa	Predicted RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	OST1	P41543	476 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	SAD1	P43589	448 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	TOS3	P43637	560 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	BCH1	Q05029	724 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	ASA1	Q06822	443 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	RAX1	Q08760	435 aa		3.14	□□□□□ -1.91
WHI3	YNL197C	THP3	Q12049	470 aa	Known RBP	3.14	□□□□□ -1.91
WHI3	YNL197C	MMF1	P40185	145 aa	Known RBP	3.13	□□□□□ -1.91
WHI3	YNL197C	JLP2	P40206	208 aa		3.13	□□□□□ -1.91
WHI3	YNL197C	GPI8	P49018	411 aa		3.13	□□□□□ -1.91
WHI3	YNL197C	LSC1	P53598	329 aa	Known RBP	3.13	□□□□□ -1.91
WHI3	YNL197C	RET3	P53600	189 aa		3.13	□□□□□ -1.91
WHI3	YNL197C	AGA1	P32323	725 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	YHR122W	P38829	231 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	YDR089W	P38966	869 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	LCP5	P40079	357 aa	Predicted RBP	3.12	□□□□□ -1.91
WHI3	YNL197C	SFH5	P47008	294 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	ABM1	P47146	123 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	WSC2	P53832	503 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	PRM1	P53835	661 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	ADA2	Q02336	434 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	MUM3	Q08750	479 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	RTC5	Q12108	567 aa	Known RBP	3.12	□□□□□ -1.91
WHI3	YNL197C	NCA2	Q12374	616 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	DBR1	P24309	405 aa	Known RBP	3.12	□□□□□ -1.91
WHI3	YNL197C	GRR1	P24814	1151 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	SLM5	P25345	492 aa	Known RBP	3.12	□□□□□ -1.91
WHI3	YNL197C	NAT2	P37293	288 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	RIB5	P38145	238 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	YBP1	P38315	674 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	MDM31	P38880	579 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	MSO1	P53604	210 aa	Known RBP	3.12	□□□□□ -1.91
WHI3	YNL197C	IBD2	P53892	351 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	ABZ2	Q03266	374 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	VPS20	Q04272	221 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	SMA2	Q04658	369 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	STE23	Q06010	1027 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	GRS2	Q06817	618 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	LDS2	Q08218	356 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	SNX3	Q08826	162 aa	Known RBP	3.12	□□□□□ -1.91
WHI3	YNL197C	NDD1	Q08887	554 aa		3.12	□□□□□ -1.91
WHI3	YNL197C	SSC1	P0CS90	654 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	ARF1	P11076	181 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	CAP2	P13517	287 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	THR4	P16120	514 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	EXG1	P23776	448 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	YCL068C	P25593	260 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	PHA2	P32452	334 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	TMT1	P32643	299 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	SKT5	P34226	696 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	MEP1	P40260	492 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	YJL213W	P40896	331 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	GOR1	P53839	350 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	RRB1	Q04225	511 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	ATP1	P07251	545 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	CPR1	P14832	162 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	HEM15	P16622	393 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	YEF1	P32622	495 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	GPX2	P38143	162 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	TIF5	P38431	405 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	ATM1	P40416	690 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	MKT1	P40850	830 aa	Known RBP	3.11	□□□□□ -1.91
WHI3	YNL197C	IDP2	P41939	412 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	SPG5	P42933	373 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	YGR117C	P53270	476 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	CCE1	Q03702	353 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	PEX27	Q08580	376 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	MDY2	Q12285	212 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	ICT1	Q12385	394 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	YCL021W-A	Q96VH3	125 aa		3.11	□□□□□ -1.91
WHI3	YNL197C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
WHI3	YNL197C	CYC3	P06182	269 aa		3.1	□□□□□ -1.91
WHI3	YNL197C	GDH1	P07262	454 aa	Known RBP	3.1	□□□□□ -1.91
WHI3	YNL197C	DBP3	P20447	523 aa	Known RBP	3.1	□□□□□ -1.91
WHI3	YNL197C	SPS22	P25380	463 aa		3.1	□□□□□ -1.91
WHI3	YNL197C	MSK1	P32048	576 aa		3.1	□□□□□ -1.91
WHI3	YNL197C	HNT3	Q08702	217 aa		3.1	□□□□□ -1.91
WHI3	YNL197C	YER078W-A	Q3E7A2	54 aa		3.1	□□□□□ -1.91
WHI3	YNL197C	YBR298C-A	Q8TGK4	73 aa		3.1	□□□□□ -1.91
WHI3	YNL197C	TPK3	P05986	398 aa		3.09	□□□□□ -1.91
WHI3	YNL197C	MAS1	P10507	462 aa		3.09	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 31 ms