RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C KGD2P19262 463 aaPredicted RBP2.05□□□□□ -2.08
UFD4YKL010C RPS5P26783 225 aaKnown RBP2.05□□□□□ -2.08
UFD4YKL010C HIS7P33734 552 aaKnown RBP2.05□□□□□ -2.08
UFD4YKL010C HXT6P39003 570 aaKnown RBP2.05□□□□□ -2.08
UFD4YKL010C HXT7P39004 570 aa2.05□□□□□ -2.08
UFD4YKL010C VRG4P40107 337 aa2.05□□□□□ -2.08
UFD4YKL010C NDE1P40215 560 aa2.05□□□□□ -2.08
UFD4YKL010C MNT3P40549 630 aa2.05□□□□□ -2.08
UFD4YKL010C POP1P41812 875 aa2.05□□□□□ -2.08
UFD4YKL010C YJR124CP47159 448 aa2.05□□□□□ -2.08
UFD4YKL010C MTL1P53214 551 aa2.05□□□□□ -2.08
UFD4YKL010C TRM112P53738 135 aaPredicted RBP2.05□□□□□ -2.08
UFD4YKL010C DUS1P53759 423 aaKnown RBP2.05□□□□□ -2.08
UFD4YKL010C MDM36Q06820 579 aa2.05□□□□□ -2.08
UFD4YKL010C RPN8Q08723 338 aaKnown RBP2.05□□□□□ -2.08
UFD4YKL010C ACF2Q12168 779 aa2.05□□□□□ -2.08
UFD4YKL010C TY1A-NL1Q12391 440 aaKnown RBP2.05□□□□□ -2.08
UFD4YKL010C SET6Q12529 373 aa2.05□□□□□ -2.08
UFD4YKL010C TOR1P35169 2470 aa2.04□□□□□ -2.08
UFD4YKL010C ARG3P05150 338 aa2.04□□□□□ -2.08
UFD4YKL010C PBN1P25580 416 aa2.04□□□□□ -2.08
UFD4YKL010C HXT4P32467 576 aa2.04□□□□□ -2.08
UFD4YKL010C HBS1P32769 611 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C TOM22P49334 152 aa2.04□□□□□ -2.08
UFD4YKL010C MUP1P50276 574 aa2.04□□□□□ -2.08
UFD4YKL010C VPS62P53285 467 aa2.04□□□□□ -2.08
UFD4YKL010C COQ6P53318 479 aa2.04□□□□□ -2.08
UFD4YKL010C CIK1Q01649 594 aa2.04□□□□□ -2.08
UFD4YKL010C MTD1Q02046 320 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C NSE5Q03718 556 aa2.04□□□□□ -2.08
UFD4YKL010C ENV7Q12003 364 aa2.04□□□□□ -2.08
UFD4YKL010C PUS9Q12069 462 aa2.04□□□□□ -2.08
UFD4YKL010C YPL245WQ12179 454 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C RRP12Q12754 1228 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C CCH1P50077 2039 aa2.04□□□□□ -2.08
UFD4YKL010C DAL81P21657 970 aa2.04□□□□□ -2.08
UFD4YKL010C SHU2P38957 223 aa2.04□□□□□ -2.08
UFD4YKL010C FET3P38993 636 aa2.04□□□□□ -2.08
UFD4YKL010C SWD1P39706 426 aa2.04□□□□□ -2.08
UFD4YKL010C AIM23P47015 356 aa2.04□□□□□ -2.08
UFD4YKL010C MNT2P53059 558 aa2.04□□□□□ -2.08
UFD4YKL010C RTS3P53289 263 aa2.04□□□□□ -2.08
UFD4YKL010C LEE1Q02799 301 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C PPN1Q04119 674 aa2.04□□□□□ -2.08
UFD4YKL010C RRP45Q05636 305 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C YHC1Q05900 231 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C TEN1Q07921 160 aa2.04□□□□□ -2.08
UFD4YKL010C RSB1Q08417 382 aa2.04□□□□□ -2.08
UFD4YKL010C YLR358CO13565 187 aa2.04□□□□□ -2.08
UFD4YKL010C NSP1P14907 823 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C FUR1P18562 216 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C PEX3P28795 441 aa2.04□□□□□ -2.08
UFD4YKL010C NUP2P32499 720 aa2.04□□□□□ -2.08
UFD4YKL010C STE5P32917 917 aa2.04□□□□□ -2.08
UFD4YKL010C MAC1P35192 417 aa2.04□□□□□ -2.08
UFD4YKL010C YHR127WP38833 243 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C SER3P40054 469 aa2.04□□□□□ -2.08
UFD4YKL010C YIL165CP40446 119 aa2.04□□□□□ -2.08
UFD4YKL010C UFE1P41834 346 aa2.04□□□□□ -2.08
UFD4YKL010C YRB1P41920 201 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C MDV1P47025 714 aa2.04□□□□□ -2.08
UFD4YKL010C CWC23P52868 283 aaPredicted RBP2.04□□□□□ -2.08
UFD4YKL010C ARE2P53629 642 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C SMX3P54999 86 aaPredicted RBP2.04□□□□□ -2.08
UFD4YKL010C GSF2Q04697 403 aaKnown RBP2.04□□□□□ -2.08
UFD4YKL010C SPO77Q06134 477 aa2.04□□□□□ -2.08
UFD4YKL010C SYO1Q07395 620 aa2.04□□□□□ -2.08
UFD4YKL010C HUA2Q12134 243 aa2.04□□□□□ -2.08
UFD4YKL010C YLR122CQ12312 125 aa2.04□□□□□ -2.08
UFD4YKL010C RPN6Q12377 434 aa2.04□□□□□ -2.08
UFD4YKL010C AHC1Q12433 566 aa2.04□□□□□ -2.08
UFD4YKL010C APC2Q12440 853 aa2.04□□□□□ -2.08
UFD4YKL010C URE2P23202 354 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C ECT1P33412 323 aa2.03□□□□□ -2.08
UFD4YKL010C NUF2P33895 451 aa2.03□□□□□ -2.08
UFD4YKL010C LDH1P38139 375 aa2.03□□□□□ -2.08
UFD4YKL010C ATG14P38270 344 aa2.03□□□□□ -2.08
UFD4YKL010C YPC1P38298 316 aa2.03□□□□□ -2.08
UFD4YKL010C RRP4P38792 359 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C RRG9P40156 214 aa2.03□□□□□ -2.08
UFD4YKL010C LYS12P40495 371 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C IRC24P40580 263 aa2.03□□□□□ -2.08
UFD4YKL010C LEM3P42838 414 aa2.03□□□□□ -2.08
UFD4YKL010C YGR201CP42936 225 aa2.03□□□□□ -2.08
UFD4YKL010C RHO3Q00245 231 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C KRE28Q04431 385 aa2.03□□□□□ -2.08
UFD4YKL010C SVF1Q05515 481 aa2.03□□□□□ -2.08
UFD4YKL010C PEX10Q05568 337 aa2.03□□□□□ -2.08
UFD4YKL010C YPR127WQ06494 345 aa2.03□□□□□ -2.08
UFD4YKL010C YLL007CQ07799 665 aa2.03□□□□□ -2.08
UFD4YKL010C SGT1Q08446 395 aa2.03□□□□□ -2.08
UFD4YKL010C GLO4Q12320 285 aa2.03□□□□□ -2.08
UFD4YKL010C YOR019WQ99248 730 aa2.03□□□□□ -2.08
UFD4YKL010C YPR117WQ06116 2489 aa2.03□□□□□ -2.08
UFD4YKL010C PRC1P00729 532 aa2.03□□□□□ -2.08
UFD4YKL010C YOL163WP0CF20 169 aa2.03□□□□□ -2.08
UFD4YKL010C SST2P11972 698 aaKnown RBP2.03□□□□□ -2.08
UFD4YKL010C GCN3P14741 305 aa2.03□□□□□ -2.08
UFD4YKL010C RSC6P25632 483 aa2.03□□□□□ -2.08
UFD4YKL010C TRR1P29509 319 aaKnown RBP2.03□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms