RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	CMR1	Q12510	522 aa	Known RBP	3.14	□□□□□ -1.91
USE1	YGL098W	PCC1	Q3E833	88 aa		3.14	□□□□□ -1.91
USE1	YGL098W	PHO5	P00635	467 aa		3.13	□□□□□ -1.91
USE1	YGL098W	FLP1	P03870	423 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SCEI	P03882	235 aa		3.13	□□□□□ -1.91
USE1	YGL098W	GAL80	P04387	435 aa		3.13	□□□□□ -1.91
USE1	YGL098W	TRP4	P07285	380 aa	Predicted RBP	3.13	□□□□□ -1.91
USE1	YGL098W	CHS1	P08004	1131 aa		3.13	□□□□□ -1.91
USE1	YGL098W	CIT2	P08679	460 aa		3.13	□□□□□ -1.91
USE1	YGL098W	RPS18A	P0CX55	146 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	RPS18B	P0CX56	146 aa	Predicted RBP	3.13	□□□□□ -1.91
USE1	YGL098W	INO1	P11986	533 aa		3.13	□□□□□ -1.91
USE1	YGL098W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
USE1	YGL098W	MSN1	P22148	382 aa		3.13	□□□□□ -1.91
USE1	YGL098W	PPH22	P23595	377 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
USE1	YGL098W	MNE1	P24720	663 aa		3.13	□□□□□ -1.91
USE1	YGL098W	BUB2	P26448	306 aa	Predicted RBP	3.13	□□□□□ -1.91
USE1	YGL098W	PHO91	P27514	894 aa		3.13	□□□□□ -1.91
USE1	YGL098W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
USE1	YGL098W	RPL8B	P29453	256 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	URA10	P30402	227 aa		3.13	□□□□□ -1.91
USE1	YGL098W	ACB1	P31787	87 aa		3.13	□□□□□ -1.91
USE1	YGL098W	ARO7	P32178	256 aa		3.13	□□□□□ -1.91
USE1	YGL098W	RIM1	P32445	135 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	PEX2	P32800	271 aa		3.13	□□□□□ -1.91
USE1	YGL098W	LHP1	P33399	275 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	OAR1	P35731	278 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SNU114	P36048	1008 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	KAE1	P36132	386 aa		3.13	□□□□□ -1.91
USE1	YGL098W	YKR075C	P36155	307 aa		3.13	□□□□□ -1.91
USE1	YGL098W	AVT5	P38176	459 aa		3.13	□□□□□ -1.91
USE1	YGL098W	CBR1	P38626	284 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	PRS3	P38689	320 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	SPL2	P38839	148 aa		3.13	□□□□□ -1.91
USE1	YGL098W	FAD1	P38913	306 aa		3.13	□□□□□ -1.91
USE1	YGL098W	CKB2	P38930	258 aa		3.13	□□□□□ -1.91
USE1	YGL098W	VPS45	P38932	577 aa		3.13	□□□□□ -1.91
USE1	YGL098W	RAD55	P38953	406 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SAW1	P39735	261 aa		3.13	□□□□□ -1.91
USE1	YGL098W	AFG3	P39925	761 aa		3.13	□□□□□ -1.91
USE1	YGL098W	AIM10	P39965	576 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	LSM5	P40089	93 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	ALG8	P40351	577 aa		3.13	□□□□□ -1.91
USE1	YGL098W	TMA108	P40462	946 aa		3.13	□□□□□ -1.91
USE1	YGL098W	CIT3	P43635	486 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SPO74	P45819	413 aa		3.13	□□□□□ -1.91
USE1	YGL098W	TAF4	P50105	388 aa		3.13	□□□□□ -1.91
USE1	YGL098W	YGL039W	P53183	348 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	RRN9	P53437	365 aa		3.13	□□□□□ -1.91
USE1	YGL098W	TIM8	P57744	87 aa		3.13	□□□□□ -1.91
USE1	YGL098W	RPA49	Q01080	415 aa	Predicted RBP	3.13	□□□□□ -1.91
USE1	YGL098W	ERO1	Q03103	563 aa		3.13	□□□□□ -1.91
USE1	YGL098W	LRS4	Q04087	347 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	YMR130W	Q04223	302 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SMA2	Q04658	369 aa		3.13	□□□□□ -1.91
USE1	YGL098W	RCO1	Q04779	684 aa		3.13	□□□□□ -1.91
USE1	YGL098W	THI7	Q05998	598 aa		3.13	□□□□□ -1.91
USE1	YGL098W	YLR173W	Q06247	608 aa		3.13	□□□□□ -1.91
USE1	YGL098W	PHO92	Q06390	306 aa		3.13	□□□□□ -1.91
USE1	YGL098W	GPI11	Q06636	219 aa		3.13	□□□□□ -1.91
USE1	YGL098W	RAD34	Q06665	692 aa		3.13	□□□□□ -1.91
USE1	YGL098W	TPO1	Q07824	586 aa		3.13	□□□□□ -1.91
USE1	YGL098W	ENT4	Q07872	247 aa		3.13	□□□□□ -1.91
USE1	YGL098W	PML1	Q07930	204 aa	Predicted RBP	3.13	□□□□□ -1.91
USE1	YGL098W	RRP40	Q08285	240 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	DSE3	Q08729	430 aa		3.13	□□□□□ -1.91
USE1	YGL098W	GUP2	Q08929	609 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SLF1	Q12034	447 aa	Known RBP	3.13	□□□□□ -1.91
USE1	YGL098W	ATX2	Q12067	313 aa		3.13	□□□□□ -1.91
USE1	YGL098W	APC9	Q12107	265 aa		3.13	□□□□□ -1.91
USE1	YGL098W	NMD4	Q12129	218 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SFM1	Q12314	213 aa		3.13	□□□□□ -1.91
USE1	YGL098W	GLO4	Q12320	285 aa		3.13	□□□□□ -1.91
USE1	YGL098W	YGL194C-A	Q2V2P6	80 aa		3.13	□□□□□ -1.91
USE1	YGL098W	SRN2	Q99176	213 aa		3.13	□□□□□ -1.91
USE1	YGL098W	ECM3	Q99252	613 aa		3.13	□□□□□ -1.91
USE1	YGL098W	YRF1-1	P0CX20	1796 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YRF1-5	P0CX21	1796 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YRF1-8	P0CX22	1796 aa		3.12	□□□□□ -1.91
USE1	YGL098W	CYC1	P00044	109 aa	Predicted RBP	3.12	□□□□□ -1.91
USE1	YGL098W	HTB1	P02293	131 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	HTB2	P02294	131 aa		3.12	□□□□□ -1.91
USE1	YGL098W	RPP2A	P05319	106 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	PEP4	P07267	405 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	MET3	P08536	511 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SSA3	P09435	649 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
USE1	YGL098W	YPK2	P18961	677 aa		3.12	□□□□□ -1.91
USE1	YGL098W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
USE1	YGL098W	PHO80	P20052	293 aa		3.12	□□□□□ -1.91
USE1	YGL098W	DAL81	P21657	970 aa		3.12	□□□□□ -1.91
USE1	YGL098W	IDP1	P21954	428 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	GRR1	P24814	1151 aa		3.12	□□□□□ -1.91
USE1	YGL098W	CDC20	P26309	610 aa		3.12	□□□□□ -1.91
USE1	YGL098W	YUR1	P26725	428 aa		3.12	□□□□□ -1.91
USE1	YGL098W	SPS19	P32573	292 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	ECT1	P33412	323 aa		3.12	□□□□□ -1.91
USE1	YGL098W	WBP1	P33767	430 aa	Known RBP	3.12	□□□□□ -1.91
USE1	YGL098W	DHR2	P36009	735 aa	Predicted RBP	3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms